Silkworm BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0022
         (648 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U53338-4|AAA96192.3|  235|Caenorhabditis elegans Hypothetical pr...    31   0.93 
AF317421-1|AAK69599.1|  235|Caenorhabditis elegans lysosomal-ass...    31   0.93 
Z54306-5|CAD59141.1| 1012|Caenorhabditis elegans Hypothetical pr...    29   2.1  
Z54306-4|CAA91091.1| 1014|Caenorhabditis elegans Hypothetical pr...    29   2.1  
AY314771-1|AAQ84878.1| 1012|Caenorhabditis elegans latrophilin-l...    29   2.1  
AY314770-1|AAQ84877.1| 1014|Caenorhabditis elegans latrophilin-l...    29   2.1  
U00065-2|AAL27237.1|  672|Caenorhabditis elegans Prion-like-(q/n...    25   4.3  
Z81015-4|CAB02658.2| 1170|Caenorhabditis elegans Hypothetical pr...    28   5.0  
Z81481-6|CAB63435.1|  344|Caenorhabditis elegans Hypothetical pr...    27   8.7  
Z47358-8|CAA87433.1|  702|Caenorhabditis elegans Hypothetical pr...    27   8.7  
U41030-4|AAA82364.1|  547|Caenorhabditis elegans Hypothetical pr...    27   8.7  

>U53338-4|AAA96192.3|  235|Caenorhabditis elegans Hypothetical
           protein C05E11.3 protein.
          Length = 235

 Score = 30.7 bits (66), Expect = 0.93
 Identities = 12/29 (41%), Positives = 17/29 (58%), Gaps = 1/29 (3%)
 Frame = +2

Query: 170 ERGSEWLC-CFCLHVRTGTIILGSWHLFL 253
           E   E+ C C C HV+TG  I+G  H+ +
Sbjct: 33  ESSDEYRCLCNCFHVKTGAFIIGCVHVLM 61


>AF317421-1|AAK69599.1|  235|Caenorhabditis elegans
           lysosomal-associated transmembraneprotein protein.
          Length = 235

 Score = 30.7 bits (66), Expect = 0.93
 Identities = 12/29 (41%), Positives = 17/29 (58%), Gaps = 1/29 (3%)
 Frame = +2

Query: 170 ERGSEWLC-CFCLHVRTGTIILGSWHLFL 253
           E   E+ C C C HV+TG  I+G  H+ +
Sbjct: 33  ESSDEYRCLCNCFHVKTGAFIIGCVHVLM 61


>Z54306-5|CAD59141.1| 1012|Caenorhabditis elegans Hypothetical
           protein B0457.1b protein.
          Length = 1012

 Score = 29.5 bits (63), Expect = 2.1
 Identities = 14/37 (37%), Positives = 18/37 (48%)
 Frame = -2

Query: 623 TQIASCRQNGDGKVEDLKTEEGQQISRFPTSGAVDHN 513
           T  A C +   GK     TEEGQ ++ FP S   + N
Sbjct: 200 TSSAPCPEGSSGKQLWACTEEGQWLTEFPNSAGCESN 236


>Z54306-4|CAA91091.1| 1014|Caenorhabditis elegans Hypothetical
           protein B0457.1a protein.
          Length = 1014

 Score = 29.5 bits (63), Expect = 2.1
 Identities = 14/37 (37%), Positives = 18/37 (48%)
 Frame = -2

Query: 623 TQIASCRQNGDGKVEDLKTEEGQQISRFPTSGAVDHN 513
           T  A C +   GK     TEEGQ ++ FP S   + N
Sbjct: 202 TSSAPCPEGSSGKQLWACTEEGQWLTEFPNSAGCESN 238


>AY314771-1|AAQ84878.1| 1012|Caenorhabditis elegans latrophilin-like
           protein LAT-1B protein.
          Length = 1012

 Score = 29.5 bits (63), Expect = 2.1
 Identities = 14/37 (37%), Positives = 18/37 (48%)
 Frame = -2

Query: 623 TQIASCRQNGDGKVEDLKTEEGQQISRFPTSGAVDHN 513
           T  A C +   GK     TEEGQ ++ FP S   + N
Sbjct: 200 TSSAPCPEGSSGKQLWACTEEGQWLTEFPNSAGCESN 236


>AY314770-1|AAQ84877.1| 1014|Caenorhabditis elegans latrophilin-like
           protein LAT-1A protein.
          Length = 1014

 Score = 29.5 bits (63), Expect = 2.1
 Identities = 14/37 (37%), Positives = 18/37 (48%)
 Frame = -2

Query: 623 TQIASCRQNGDGKVEDLKTEEGQQISRFPTSGAVDHN 513
           T  A C +   GK     TEEGQ ++ FP S   + N
Sbjct: 202 TSSAPCPEGSSGKQLWACTEEGQWLTEFPNSAGCESN 238


>U00065-2|AAL27237.1|  672|Caenorhabditis elegans
           Prion-like-(q/n-rich)-domain-bearingprotein protein 25
           protein.
          Length = 672

 Score = 24.6 bits (51), Expect(2) = 4.3
 Identities = 9/18 (50%), Positives = 12/18 (66%)
 Frame = +3

Query: 246 CSCPSGTRSFSSDCA*SS 299
           C CPSGT + ++ C  SS
Sbjct: 601 CQCPSGTTNVNNFCTTSS 618



 Score = 22.2 bits (45), Expect(2) = 4.3
 Identities = 11/23 (47%), Positives = 16/23 (69%), Gaps = 3/23 (13%)
 Frame = +3

Query: 369 CTAHTTVKCGNSSQPI---LSTC 428
           C+A  TV+  +S+QPI   +STC
Sbjct: 624 CSAGQTVQLDSSNQPINCLVSTC 646


>Z81015-4|CAB02658.2| 1170|Caenorhabditis elegans Hypothetical
           protein C11E4.6 protein.
          Length = 1170

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 13/30 (43%), Positives = 17/30 (56%)
 Frame = +1

Query: 358 RTGDVLPTPLSNVETRPSPYSQHASHPSDH 447
           R+ D LPT L NV TRP+     +  P D+
Sbjct: 432 RSSDTLPTRLKNVRTRPTEKQIASVLPGDN 461


>Z81481-6|CAB63435.1|  344|Caenorhabditis elegans Hypothetical
           protein C38D9.8 protein.
          Length = 344

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 14/29 (48%), Positives = 18/29 (62%)
 Frame = -2

Query: 161 TWDGILTLPWL*NAQELVPEYAPTIFPVK 75
           +WD I+ L  L NAQE  PE+ P  F +K
Sbjct: 235 SWDPIVVLEGL-NAQEWSPEHRPQKFSLK 262


>Z47358-8|CAA87433.1|  702|Caenorhabditis elegans Hypothetical
           protein ZK1307.6 protein.
          Length = 702

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 16/48 (33%), Positives = 23/48 (47%)
 Frame = +1

Query: 322 ESSPVSSWSNVGRTGDVLPTPLSNVETRPSPYSQHASHPSDHSLIYHD 465
           +SS   S S++   G +   P S+  +  S   QH +H S  S  YHD
Sbjct: 110 DSSTHPSSSSLAGLGALATAPSSSQSSLSSHPHQHHNHHSSSSSSYHD 157


>U41030-4|AAA82364.1|  547|Caenorhabditis elegans Hypothetical
           protein C44C1.4a protein.
          Length = 547

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 14/40 (35%), Positives = 21/40 (52%)
 Frame = -3

Query: 391 LTVVWAVHLQCAPHCSMNSLGMTHGPVHPAIEDHAQSLLK 272
           L +++A+  + AP   +NSL     P HP I     +LLK
Sbjct: 378 LVLLYALRFENAPGNELNSLISQLRPQHPKIHQTVSTLLK 417


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,511,970
Number of Sequences: 27780
Number of extensions: 331592
Number of successful extensions: 1024
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 925
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1024
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1434198608
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)