Silkworm BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0033
         (693 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z83118-1|CAB05575.1|  975|Caenorhabditis elegans Hypothetical pr...    27   9.6  
Z81552-6|CAB04489.1|  975|Caenorhabditis elegans Hypothetical pr...    27   9.6  

>Z83118-1|CAB05575.1|  975|Caenorhabditis elegans Hypothetical
           protein F56G4.1 protein.
          Length = 975

 Score = 27.5 bits (58), Expect = 9.6
 Identities = 15/56 (26%), Positives = 28/56 (50%)
 Frame = +3

Query: 63  STSVSTCSEYKYFVTYFKKLFRLGCIIVTVNMSLKILVNSESFIRKLVSFLSRLNK 230
           S  V  C E +Y     K +  L  +++ +N S++  +  E+F ++   +L RL K
Sbjct: 310 SVIVHHCFEKQYLQLGIKSVIALILVLIALNASIQYTIRYENFWKQ--KYLPRLEK 363


>Z81552-6|CAB04489.1|  975|Caenorhabditis elegans Hypothetical
           protein F56G4.1 protein.
          Length = 975

 Score = 27.5 bits (58), Expect = 9.6
 Identities = 15/56 (26%), Positives = 28/56 (50%)
 Frame = +3

Query: 63  STSVSTCSEYKYFVTYFKKLFRLGCIIVTVNMSLKILVNSESFIRKLVSFLSRLNK 230
           S  V  C E +Y     K +  L  +++ +N S++  +  E+F ++   +L RL K
Sbjct: 310 SVIVHHCFEKQYLQLGIKSVIALILVLIALNASIQYTIRYENFWKQ--KYLPRLEK 363


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,108,539
Number of Sequences: 27780
Number of extensions: 202461
Number of successful extensions: 471
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 468
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 471
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1592382278
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)