Silkworm BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0016
         (725 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z69635-6|CAA93461.1|  695|Caenorhabditis elegans Hypothetical pr...    33   0.27 
AF016669-2|AAB66099.2|  455|Caenorhabditis elegans Hypothetical ...    29   3.4  
AL132949-11|CAB70104.2|  927|Caenorhabditis elegans Hypothetical...    28   5.9  
AC199169-2|ABO33254.1|  319|Caenorhabditis elegans Hypothetical ...    28   5.9  

>Z69635-6|CAA93461.1|  695|Caenorhabditis elegans Hypothetical
           protein F19B6.4 protein.
          Length = 695

 Score = 32.7 bits (71), Expect = 0.27
 Identities = 15/31 (48%), Positives = 21/31 (67%), Gaps = 2/31 (6%)
 Frame = +1

Query: 160 HNVTVSGCEESSSHCILKRNTDA--TIGLQF 246
           HN T+SGCE +SS   LK + D+  T G++F
Sbjct: 625 HNSTISGCESNSSVATLKMSIDSNCTTGIEF 655


>AF016669-2|AAB66099.2|  455|Caenorhabditis elegans Hypothetical
           protein K10G6.4 protein.
          Length = 455

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 17/42 (40%), Positives = 22/42 (52%)
 Frame = +3

Query: 174 ERMRRVVQSLYTEEKHRRHDRPAVYTTHNIDRINTEVHGVIM 299
           ER+   V+SLY + +    DR  V TT  +DR   EV  V M
Sbjct: 347 ERLELEVKSLYEKLQKSAEDRQKVETTLKLDRDRLEVSLVTM 388


>AL132949-11|CAB70104.2|  927|Caenorhabditis elegans Hypothetical
           protein Y53F4B.13 protein.
          Length = 927

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 14/56 (25%), Positives = 26/56 (46%)
 Frame = -1

Query: 194 DDSSHPLTVTLWTVASLDPQSLKNLASALAKSTAAVMKNNIFVDKMRFGSMKNNYK 27
           D+  H   +     +S  P+S ++  S LAK  AA  +     ++  F ++K  Y+
Sbjct: 11  DEYQHKEQMVTNRTSSFQPKSTEDSISKLAKMRAADRREEFMEERASFSAVKRGYQ 66


>AC199169-2|ABO33254.1|  319|Caenorhabditis elegans Hypothetical
           protein F38A1.15 protein.
          Length = 319

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 19/57 (33%), Positives = 28/57 (49%), Gaps = 1/57 (1%)
 Frame = +3

Query: 138 RVQTSDSPQRDGERMRRVVQSLYTEEKHRRHDRPAVYTTHNIDRIN-TEVHGVIMNI 305
           +VQT  SP   GE  +  V S YT E     D  A+ T   ++  N T++   ++NI
Sbjct: 231 KVQTEKSPYTYGETFKIYVNSSYT-EAFIYLDNNAIITHELVEGYNMTDIDSFVINI 286


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,050,513
Number of Sequences: 27780
Number of extensions: 335677
Number of successful extensions: 1129
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1052
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1126
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1708383636
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)