Silkworm BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0001
         (734 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z66513-7|CAA91336.2|  289|Caenorhabditis elegans Hypothetical pr...    32   0.48 
Y08815-1|CAA70049.1|  289|Caenorhabditis elegans TFIIE-beta prot...    32   0.48 

>Z66513-7|CAA91336.2|  289|Caenorhabditis elegans Hypothetical
           protein F54D5.11 protein.
          Length = 289

 Score = 31.9 bits (69), Expect = 0.48
 Identities = 28/79 (35%), Positives = 39/79 (49%), Gaps = 2/79 (2%)
 Frame = +1

Query: 34  VFDLRKDSYSIMSRWKRLNKSPQSNSHRV*ESASLS-RPTEKIKGKTQWV-VARLHGSSG 207
           +FDL K S +       L ++  +N   + ES   + RP  KIKGKT  V VAR H   G
Sbjct: 110 IFDLSKRSLAF------LQEALPNNPRLIMESEKFAFRPPYKIKGKTSLVAVARKHYQDG 163

Query: 208 *ATILSLNLSKLECNIASL 264
              IL  +L++   N  +L
Sbjct: 164 KGGILVSDLAECVANYDAL 182


>Y08815-1|CAA70049.1|  289|Caenorhabditis elegans TFIIE-beta protein
           protein.
          Length = 289

 Score = 31.9 bits (69), Expect = 0.48
 Identities = 28/79 (35%), Positives = 39/79 (49%), Gaps = 2/79 (2%)
 Frame = +1

Query: 34  VFDLRKDSYSIMSRWKRLNKSPQSNSHRV*ESASLS-RPTEKIKGKTQWV-VARLHGSSG 207
           +FDL K S +       L ++  +N   + ES   + RP  KIKGKT  V VAR H   G
Sbjct: 110 IFDLSKRSLAF------LQEALPNNPRLIMESEKFAFRPPYKIKGKTSLVAVARKHYQDG 163

Query: 208 *ATILSLNLSKLECNIASL 264
              IL  +L++   N  +L
Sbjct: 164 KGGILVSDLAECVANYDAL 182


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,918,028
Number of Sequences: 27780
Number of extensions: 329285
Number of successful extensions: 586
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 569
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 586
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1724918872
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)