Silkworm BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= cesb0071
         (797 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC084197-5|AAO38574.1|  335|Caenorhabditis elegans Serpentine re...    30   2.2  
AC084197-4|AAO38575.1|  335|Caenorhabditis elegans Serpentine re...    28   8.9  

>AC084197-5|AAO38574.1|  335|Caenorhabditis elegans Serpentine
           receptor, class v protein26 protein.
          Length = 335

 Score = 29.9 bits (64), Expect = 2.2
 Identities = 14/37 (37%), Positives = 21/37 (56%)
 Frame = -3

Query: 231 VLELLFCFCTVLIFKVNFRYLSRLRISCIVWFRRCIY 121
           V  LLF F  +LIF     Y SR +++  +++ R IY
Sbjct: 226 VFVLLFAFFAILIFYAILNYCSRAQMTAEMFYLRTIY 262


>AC084197-4|AAO38575.1|  335|Caenorhabditis elegans Serpentine
           receptor, class v protein27 protein.
          Length = 335

 Score = 27.9 bits (59), Expect = 8.9
 Identities = 13/37 (35%), Positives = 21/37 (56%)
 Frame = -3

Query: 231 VLELLFCFCTVLIFKVNFRYLSRLRISCIVWFRRCIY 121
           VL LLF F  +L+F     Y SR + +  +++ R +Y
Sbjct: 226 VLVLLFAFFLILVFYTFLNYFSRTQNNGPIFYMRGLY 262


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,140,406
Number of Sequences: 27780
Number of extensions: 283254
Number of successful extensions: 592
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 572
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 592
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1945792630
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)