Silkworm BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= cesb0058
         (725 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U41542-2|AAR30212.1|  623|Caenorhabditis elegans Suppressor of p...    29   4.5  
U41542-1|AAR30211.1|  684|Caenorhabditis elegans Suppressor of p...    29   4.5  
AF106575-17|AAD56300.2|  333|Caenorhabditis elegans Serpentine r...    28   7.8  
AF016686-14|AAB66232.1|  288|Caenorhabditis elegans Hypothetical...    28   7.8  

>U41542-2|AAR30212.1|  623|Caenorhabditis elegans Suppressor of
           presenilin defectprotein 3, isoform b protein.
          Length = 623

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 14/44 (31%), Positives = 19/44 (43%)
 Frame = +3

Query: 177 RGCVQQHWRSERLWSHNYHEHVACREQRLTDLTCTCG*SIRVPI 308
           R C    W    LW H +  H+   +Q  T + C+   S RV I
Sbjct: 264 RNCPYVSWNVSSLWRH-FRHHIQKSKQSWTCIACSYSSSSRVKI 306


>U41542-1|AAR30211.1|  684|Caenorhabditis elegans Suppressor of
           presenilin defectprotein 3, isoform a protein.
          Length = 684

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 14/44 (31%), Positives = 19/44 (43%)
 Frame = +3

Query: 177 RGCVQQHWRSERLWSHNYHEHVACREQRLTDLTCTCG*SIRVPI 308
           R C    W    LW H +  H+   +Q  T + C+   S RV I
Sbjct: 264 RNCPYVSWNVSSLWRH-FRHHIQKSKQSWTCIACSYSSSSRVKI 306


>AF106575-17|AAD56300.2|  333|Caenorhabditis elegans Serpentine
           receptor, class h protein5 protein.
          Length = 333

 Score = 27.9 bits (59), Expect = 7.8
 Identities = 18/66 (27%), Positives = 30/66 (45%)
 Frame = +1

Query: 406 VLNSDCSIFQTGMNDFHPIYIISI*ANLRIYLTGFSLLHVVIPSQRESVINTCYAHIYFE 585
           +LN  C   Q   + F  ++IIS   ++ IY+  F +L    P       N   AH++  
Sbjct: 1   MLNKSCDFEQP--SGFSTLHIISTSISVPIYIVAFWILIFKSPVHFSKYRNYLVAHVFSG 58

Query: 586 KLLTIY 603
            LL ++
Sbjct: 59  LLLELH 64


>AF016686-14|AAB66232.1|  288|Caenorhabditis elegans Hypothetical
           protein R07C3.2 protein.
          Length = 288

 Score = 27.9 bits (59), Expect = 7.8
 Identities = 11/25 (44%), Positives = 15/25 (60%)
 Frame = +1

Query: 370 IHYIIGMRSNLIVLNSDCSIFQTGM 444
           +HYI     N+I  N D SI +TG+
Sbjct: 116 VHYIFSKNLNMICKNLDVSIIETGV 140


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,204,624
Number of Sequences: 27780
Number of extensions: 329817
Number of successful extensions: 611
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 596
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 611
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1708383636
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)