Silkworm BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= cesb0056
         (481 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U23179-4|AAK68209.1|  341|Caenorhabditis elegans Serpentine rece...    28   4.0  
Z70757-2|CAA94798.1|  611|Caenorhabditis elegans Hypothetical pr...    27   7.0  
DQ178244-1|ABA18183.1|  521|Caenorhabditis elegans putative sulf...    27   7.0  
AY954525-1|AAX34433.1|  611|Caenorhabditis elegans anion transpo...    27   7.0  
AY887917-1|AAX34429.1|  611|Caenorhabditis elegans anion transpo...    27   7.0  
AF026209-8|AAB71275.2|  328|Caenorhabditis elegans Seven tm rece...    27   9.3  

>U23179-4|AAK68209.1|  341|Caenorhabditis elegans Serpentine
           receptor, class b (beta)protein 3 protein.
          Length = 341

 Score = 27.9 bits (59), Expect = 4.0
 Identities = 13/33 (39%), Positives = 22/33 (66%)
 Frame = +1

Query: 220 FLLQNGNPQIDCMIFVYFVMNIIF*PINMQLCY 318
           FL  +GN  + C++ VYF+ N++F   +M LC+
Sbjct: 49  FLHFHGN--LKCLLIVYFICNLLF---SMALCF 76


>Z70757-2|CAA94798.1|  611|Caenorhabditis elegans Hypothetical
           protein ZK287.2 protein.
          Length = 611

 Score = 27.1 bits (57), Expect = 7.0
 Identities = 9/19 (47%), Positives = 14/19 (73%)
 Frame = +1

Query: 412 FHIKTVFSSSRGGPVPNSP 468
           +H+KTV+   RG P+P+ P
Sbjct: 282 YHVKTVYEIPRGFPLPSIP 300


>DQ178244-1|ABA18183.1|  521|Caenorhabditis elegans putative sulfate
           transporter prestinprotein.
          Length = 521

 Score = 27.1 bits (57), Expect = 7.0
 Identities = 9/19 (47%), Positives = 14/19 (73%)
 Frame = +1

Query: 412 FHIKTVFSSSRGGPVPNSP 468
           +H+KTV+   RG P+P+ P
Sbjct: 192 YHVKTVYEIPRGFPLPSIP 210


>AY954525-1|AAX34433.1|  611|Caenorhabditis elegans anion
           transporter SULP-8a protein.
          Length = 611

 Score = 27.1 bits (57), Expect = 7.0
 Identities = 9/19 (47%), Positives = 14/19 (73%)
 Frame = +1

Query: 412 FHIKTVFSSSRGGPVPNSP 468
           +H+KTV+   RG P+P+ P
Sbjct: 282 YHVKTVYEIPRGFPLPSIP 300


>AY887917-1|AAX34429.1|  611|Caenorhabditis elegans anion
           transporter SULP-8b protein.
          Length = 611

 Score = 27.1 bits (57), Expect = 7.0
 Identities = 9/19 (47%), Positives = 14/19 (73%)
 Frame = +1

Query: 412 FHIKTVFSSSRGGPVPNSP 468
           +H+KTV+   RG P+P+ P
Sbjct: 282 YHVKTVYEIPRGFPLPSIP 300


>AF026209-8|AAB71275.2|  328|Caenorhabditis elegans Seven tm
           receptor protein 134 protein.
          Length = 328

 Score = 26.6 bits (56), Expect = 9.3
 Identities = 13/42 (30%), Positives = 23/42 (54%)
 Frame = +2

Query: 104 FIFRRLCKVCYSKHRDVNAGPRL*LVVSISGIMVIVCFSFCY 229
           ++FR +  +C+ K+  +  G RL L+      + I  F+FCY
Sbjct: 107 YMFRYIV-ICHQKYLHLIEGKRLALLFLFPTTISITWFTFCY 147


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,544,617
Number of Sequences: 27780
Number of extensions: 204875
Number of successful extensions: 442
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 438
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 442
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 882200194
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)