SilkBase IMG001 IMG002 IMG003 IMG005 IMG006 IMG007 IMG008 IMG009 kuwako IMG010 IMG011 IMG012

Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= cesb0045
         (841 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF016663-3|AAC70878.1| 1170|Caenorhabditis elegans Hypothetical ...    57   2e-08
U58738-4|AAB00604.1|  358|Caenorhabditis elegans Hypothetical pr...    55   5e-08
AF100669-1|AAK39265.1|  931|Caenorhabditis elegans Hypothetical ...    44   1e-04
AF036692-9|AAB88330.1|  389|Caenorhabditis elegans Hypothetical ...    43   2e-04
Z81484-8|CAE11295.1|  325|Caenorhabditis elegans Hypothetical pr...    29   4.1  
AY013955-1|AAG59937.1|   27|Caenorhabditis elegans LINE-like rev...    29   5.4  
AY013956-1|AAG59938.1|   27|Caenorhabditis elegans LINE-like rev...    28   7.2  
AL110477-8|CAB76739.1| 1042|Caenorhabditis elegans Hypothetical ...    28   7.2  

>AF016663-3|AAC70878.1| 1170|Caenorhabditis elegans Hypothetical
            protein F21E9.1 protein.
          Length = 1170

 Score = 56.8 bits (131), Expect = 2e-08
 Identities = 52/182 (28%), Positives = 80/182 (43%), Gaps = 4/182 (2%)
 Frame = -2

Query: 840  GVPQGSILGPLLFIIYIN----DLPEHIHYPCSIFADDIAVVITKDATLDLNDKINATVS 673
            GVPQGS+ GPLLFI++IN    DL   I+  C  FADD+ +  T D T+     I  ++ 
Sbjct: 880  GVPQGSVSGPLLFILFINNLLIDLAPTINISC--FADDVKIFHT-DPTI-----IQNSID 931

Query: 672  KVIDWMNKNNLKANLDKTRYMQLYNRHKFXXXXXXXXXXXXNECNSIRFLGLNVDNQCSW 493
             ++ W   N L     K+  + L  R+K                +++R LGL  D +  +
Sbjct: 932  IIVSWSKLNELPLAPTKSALLALGTRNK--NQSYSVDGVPITPSSTVRDLGLITDCKLKF 989

Query: 492  NLHIDLICSKLNRFSYALWRLTKICNLKTALQAYHGYVASNIRYCIPLWGNSSHINRVYI 313
              HI  +       S  + +     + K     Y  YVA  + YC  ++  + H N V  
Sbjct: 990  EHHIVKVSCLAMLRSKQILKAFSSNSPKFYAHLYKTYVAPIMNYCSEVY--APHSNSVLS 1047

Query: 312  AQ 307
            A+
Sbjct: 1048 AK 1049


>U58738-4|AAB00604.1|  358|Caenorhabditis elegans Hypothetical
           protein F31A9.6 protein.
          Length = 358

 Score = 55.2 bits (127), Expect = 5e-08
 Identities = 31/86 (36%), Positives = 47/86 (54%), Gaps = 4/86 (4%)
 Frame = -2

Query: 840 GVPQGSILGPLLFIIYIND----LPEHIHYPCSIFADDIAVVITKDATLDLNDKINATVS 673
           GVPQG++L PLLF IY+ND    LPE +   C  FADD  +  +   T +  + + + + 
Sbjct: 76  GVPQGAVLSPLLFGIYVNDISSILPEKV--ACKQFADDTKLYASTPKT-ESENNLQSALD 132

Query: 672 KVIDWMNKNNLKANLDKTRYMQLYNR 595
            V+DW   + L  N  KT ++ +  R
Sbjct: 133 AVVDWTKGSKLTLNQSKTVHVTVGKR 158


>AF100669-1|AAK39265.1|  931|Caenorhabditis elegans Hypothetical
           protein R11E3.3 protein.
          Length = 931

 Score = 44.4 bits (100), Expect = 1e-04
 Identities = 17/74 (22%), Positives = 38/74 (51%)
 Frame = -2

Query: 840 GVPQGSILGPLLFIIYINDLPEHIHYPCSIFADDIAVVITKDATLDLNDKINATVSKVID 661
           GVPQGS++ P LF  Y+ D+P         +ADD++++          +K+   + ++  
Sbjct: 532 GVPQGSVISPNLFTFYLKDMPTQQDTMLISYADDMSIIARDKKIEKAAEKVQLHIDEIAK 591

Query: 660 WMNKNNLKANLDKT 619
           ++ +  +  + +K+
Sbjct: 592 YLKERGMSISAEKS 605


>AF036692-9|AAB88330.1|  389|Caenorhabditis elegans Hypothetical
           protein C44B12.7 protein.
          Length = 389

 Score = 43.2 bits (97), Expect = 2e-04
 Identities = 26/75 (34%), Positives = 35/75 (46%), Gaps = 2/75 (2%)
 Frame = -2

Query: 840 GVPQGSILGPLLFIIYINDLPEHI--HYPCSIFADDIAVVITKDATLDLNDKINATVSKV 667
           GVP+GS+ GP LF+I+IN L   +     CS FADD+ V             I  T+  +
Sbjct: 56  GVPKGSVSGPFLFLIFINSLLLSVPPSISCSAFADDLKVYSHSPPL------IQTTIDLI 109

Query: 666 IDWMNKNNLKANLDK 622
             W   N L   + K
Sbjct: 110 TTWSENNKLPLAVHK 124


>Z81484-8|CAE11295.1|  325|Caenorhabditis elegans Hypothetical
           protein C47A10.9 protein.
          Length = 325

 Score = 29.1 bits (62), Expect = 4.1
 Identities = 15/45 (33%), Positives = 24/45 (53%)
 Frame = -3

Query: 392 IMDMSPQISDTVYPSGEILVT*IECTLHKSNVFVLCAIFIL*LLV 258
           I + +P +    +P   ILV  I+ T +K   F L AIFI  +++
Sbjct: 160 IFERNPDLLQFDFPESPILVLAIDNTFNKYRQFALIAIFISEIMI 204


>AY013955-1|AAG59937.1|   27|Caenorhabditis elegans LINE-like
           reverse transcriptase protein.
          Length = 27

 Score = 28.7 bits (61), Expect = 5.4
 Identities = 11/15 (73%), Positives = 14/15 (93%)
 Frame = -2

Query: 825 SILGPLLFIIYINDL 781
           S+ GPLLFI++INDL
Sbjct: 1   SVSGPLLFILFINDL 15


>AY013956-1|AAG59938.1|   27|Caenorhabditis elegans LINE-like
           reverse transcriptase protein.
          Length = 27

 Score = 28.3 bits (60), Expect = 7.2
 Identities = 12/27 (44%), Positives = 18/27 (66%), Gaps = 4/27 (14%)
 Frame = -2

Query: 825 SILGPLLFIIYINDL----PEHIHYPC 757
           ++ GPLLFI+++NDL    P  I + C
Sbjct: 1   TVTGPLLFILFLNDLLLSIPPSIQFSC 27


>AL110477-8|CAB76739.1| 1042|Caenorhabditis elegans Hypothetical
            protein Y113G7B.12 protein.
          Length = 1042

 Score = 28.3 bits (60), Expect = 7.2
 Identities = 20/69 (28%), Positives = 34/69 (49%), Gaps = 2/69 (2%)
 Frame = -2

Query: 840  GVPQGSILGPLLFIIYINDLPEHIHYPCSIFADDIAVVITKDATLDLND--KINATVSKV 667
            G P+GS     +F+++IN L   I  P +I     A  I++D  +  ++   I  ++ K+
Sbjct: 950  GAPRGSESRQFMFLVFINSLLCEI--PINISCS--ACAISEDLEIYSHEPIMIEKSLRKI 1005

Query: 666  IDWMNKNNL 640
             DW   N L
Sbjct: 1006 EDWSTSNKL 1014


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,106,732
Number of Sequences: 27780
Number of extensions: 390249
Number of successful extensions: 907
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 883
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 907
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2077023564
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

- SilkBase 1999-2023 -