Silkworm BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0044
         (475 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81077-4|CAB03071.3|  618|Caenorhabditis elegans Hypothetical pr...    28   3.9  
U53339-5|AAA96201.1|  342|Caenorhabditis elegans Serpentine rece...    27   6.9  
U40029-10|AAN65326.1|  644|Caenorhabditis elegans Hypothetical p...    27   6.9  
U40029-9|AAN65325.1|  727|Caenorhabditis elegans Hypothetical pr...    27   6.9  
AF003138-6|ABE73338.1| 1551|Caenorhabditis elegans Abc transport...    27   6.9  
AC006730-2|AAK72091.1|  322|Caenorhabditis elegans Serpentine re...    27   6.9  
Z68336-4|CAA92739.2|  269|Caenorhabditis elegans Hypothetical pr...    27   9.1  
U50068-5|AAB37734.1|  722|Caenorhabditis elegans Temporarily ass...    27   9.1  
AC006730-1|AAK72090.1|  324|Caenorhabditis elegans Serpentine re...    27   9.1  

>Z81077-4|CAB03071.3|  618|Caenorhabditis elegans Hypothetical
           protein F36A2.4 protein.
          Length = 618

 Score = 27.9 bits (59), Expect = 3.9
 Identities = 11/28 (39%), Positives = 20/28 (71%)
 Frame = -1

Query: 91  AKVEVSIKDYIDKLQNDTASFKNEWENV 8
           AK+E + KDY+DKL +     +++++NV
Sbjct: 53  AKIEQNAKDYVDKLWSVAKRDRDKYKNV 80


>U53339-5|AAA96201.1|  342|Caenorhabditis elegans Serpentine
           receptor, class b (beta)protein 16 protein.
          Length = 342

 Score = 27.1 bits (57), Expect = 6.9
 Identities = 24/80 (30%), Positives = 36/80 (45%), Gaps = 6/80 (7%)
 Frame = +2

Query: 227 CSYRRESVLYGKTFLPQY----FSYFSNCNFRNILKTNVVYLFLIT--IPIISACY*FET 388
           CSY  ++ ++  TF P +      YF    F + L T   YL +I   +   + C     
Sbjct: 39  CSYFIKTFIWNSTFHPNFKLLLTMYFFAAIFHSFLFT-ASYLMMIERFLDYQTDC----D 93

Query: 389 INVSIYPYGM*HFKICDCSF 448
           I+VS+ PY + H  I  C F
Sbjct: 94  IHVSMVPYAIVHSSIACCLF 113


>U40029-10|AAN65326.1|  644|Caenorhabditis elegans Hypothetical
           protein F10G7.9b protein.
          Length = 644

 Score = 27.1 bits (57), Expect = 6.9
 Identities = 10/34 (29%), Positives = 24/34 (70%)
 Frame = -1

Query: 109 ERIVKKAKVEVSIKDYIDKLQNDTASFKNEWENV 8
           E +V+K + +V +++  D++QN++   ++E+E V
Sbjct: 436 EVVVEKKETDVVVENKNDEIQNESVEGEDEYEEV 469


>U40029-9|AAN65325.1|  727|Caenorhabditis elegans Hypothetical
           protein F10G7.9a protein.
          Length = 727

 Score = 27.1 bits (57), Expect = 6.9
 Identities = 10/34 (29%), Positives = 24/34 (70%)
 Frame = -1

Query: 109 ERIVKKAKVEVSIKDYIDKLQNDTASFKNEWENV 8
           E +V+K + +V +++  D++QN++   ++E+E V
Sbjct: 519 EVVVEKKETDVVVENKNDEIQNESVEGEDEYEEV 552


>AF003138-6|ABE73338.1| 1551|Caenorhabditis elegans Abc transporter
           family protein 2 protein.
          Length = 1551

 Score = 27.1 bits (57), Expect = 6.9
 Identities = 12/43 (27%), Positives = 21/43 (48%)
 Frame = +2

Query: 233 YRRESVLYGKTFLPQYFSYFSNCNFRNILKTNVVYLFLITIPI 361
           + +  +L GK  + Q+F     C     LK+   +LF + IP+
Sbjct: 541 FEKPDLLDGKRLIFQHFYALLVCRINYTLKSKRTFLFQVIIPL 583


>AC006730-2|AAK72091.1|  322|Caenorhabditis elegans Serpentine
           receptor, class i protein34 protein.
          Length = 322

 Score = 27.1 bits (57), Expect = 6.9
 Identities = 18/58 (31%), Positives = 31/58 (53%), Gaps = 3/58 (5%)
 Frame = +2

Query: 212 AYRTFC--SYRRESVL-YGKTFLPQYFSYFSNCNFRNILKTNVVYLFLITIPIISACY 376
           A+ TF   S RRE  L + ++  P+Y S F N +   I + N+ ++FL  + +I   +
Sbjct: 147 AFLTFLQGSTRREDQLKFIESRYPKYLSEFKNLSNFAIYQFNIWHVFLAIVGVIGGMF 204


>Z68336-4|CAA92739.2|  269|Caenorhabditis elegans Hypothetical
           protein F22B3.7 protein.
          Length = 269

 Score = 26.6 bits (56), Expect = 9.1
 Identities = 9/14 (64%), Positives = 11/14 (78%)
 Frame = +1

Query: 316 PEDQCCVFVFDNNS 357
           P+D C V VFDNN+
Sbjct: 220 PDDNCLVLVFDNNN 233


>U50068-5|AAB37734.1|  722|Caenorhabditis elegans Temporarily
           assigned gene nameprotein 292 protein.
          Length = 722

 Score = 26.6 bits (56), Expect = 9.1
 Identities = 12/35 (34%), Positives = 18/35 (51%)
 Frame = -2

Query: 213 AQQNRIARTARFILTKPQVISYAQNATCMETGQYW 109
           A+  R++   R   T+  +   +QN T ME  QYW
Sbjct: 245 AKHTRMSPQQRLDETRKLITKLSQNQTMMECFQYW 279


>AC006730-1|AAK72090.1|  324|Caenorhabditis elegans Serpentine
           receptor, class i protein33 protein.
          Length = 324

 Score = 26.6 bits (56), Expect = 9.1
 Identities = 18/57 (31%), Positives = 29/57 (50%), Gaps = 2/57 (3%)
 Frame = +2

Query: 212 AYRTFC--SYRRESVLYGKTFLPQYFSYFSNCNFRNILKTNVVYLFLITIPIISACY 376
           A+ TF   S RRE  +  +   P+Y S F N +   I + N+ ++FL  I I+   +
Sbjct: 147 AFLTFLQGSTRREKFIESR--YPKYLSEFKNLSNFAIYQFNIWHVFLAGIGIVGGIF 201


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,251,417
Number of Sequences: 27780
Number of extensions: 194426
Number of successful extensions: 566
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 558
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 566
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 860942358
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)