Silkworm BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0037
         (630 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

X59156-6|CAA41878.1|  160|Caenorhabditis elegans transposase pro...    30   1.2  
AL132943-4|CAB81975.1|  690|Caenorhabditis elegans Hypothetical ...    30   1.2  
AC006641-4|AAF39819.2|  477|Caenorhabditis elegans Hypothetical ...    30   1.2  
Z47808-8|CAA87777.2| 1087|Caenorhabditis elegans Hypothetical pr...    29   2.7  
AC006693-6|AAF60383.2|  511|Caenorhabditis elegans Hypothetical ...    28   4.8  
AC006693-4|AAF60381.2|  511|Caenorhabditis elegans Hypothetical ...    28   4.8  
U97014-3|AAB52427.3|  856|Caenorhabditis elegans Hypothetical pr...    28   6.3  

>X59156-6|CAA41878.1|  160|Caenorhabditis elegans transposase
           protein.
          Length = 160

 Score = 30.3 bits (65), Expect = 1.2
 Identities = 16/53 (30%), Positives = 23/53 (43%)
 Frame = +2

Query: 119 ISRSYRNWRLFGQLLMETKNHPREIRNVFWLFWFHLPWNSEVQTNVPISQKTC 277
           I RSY +W + GQ      N+ R    + +L W    WN   +  +  S K C
Sbjct: 14  IRRSYEDWMVHGQKSFTKSNNMRPPSMLQYLEWIENAWNDLPKDLILKSFKGC 66


>AL132943-4|CAB81975.1|  690|Caenorhabditis elegans Hypothetical
           protein Y116F11B.7 protein.
          Length = 690

 Score = 30.3 bits (65), Expect = 1.2
 Identities = 16/53 (30%), Positives = 23/53 (43%)
 Frame = +2

Query: 119 ISRSYRNWRLFGQLLMETKNHPREIRNVFWLFWFHLPWNSEVQTNVPISQKTC 277
           I RSY +W + GQ      N+ R    + +L W    WN   +  +  S K C
Sbjct: 572 IRRSYEDWMVHGQKSFTKSNNMRPPSMLQYLEWIENAWNDLPKDLILKSFKGC 624


>AC006641-4|AAF39819.2|  477|Caenorhabditis elegans Hypothetical
           protein F45D11.6 protein.
          Length = 477

 Score = 30.3 bits (65), Expect = 1.2
 Identities = 16/53 (30%), Positives = 23/53 (43%)
 Frame = +2

Query: 119 ISRSYRNWRLFGQLLMETKNHPREIRNVFWLFWFHLPWNSEVQTNVPISQKTC 277
           I RSY +W + GQ      N+ R    + +L W    WN   +  +  S K C
Sbjct: 359 IRRSYEDWMVHGQKSFTKSNNMRPPSMLQYLEWIENAWNDLPKDLILKSFKGC 411


>Z47808-8|CAA87777.2| 1087|Caenorhabditis elegans Hypothetical
           protein D2013.8a protein.
          Length = 1087

 Score = 29.1 bits (62), Expect = 2.7
 Identities = 13/28 (46%), Positives = 17/28 (60%)
 Frame = +2

Query: 359 IKLTMKMHNVICIKKSDYIVTPSLDTSS 442
           I L M + N +CI +S    +PSLD SS
Sbjct: 339 IALIMGLENTLCITRSVVYTSPSLDVSS 366


>AC006693-6|AAF60383.2|  511|Caenorhabditis elegans Hypothetical
           protein W02H5.3 protein.
          Length = 511

 Score = 28.3 bits (60), Expect = 4.8
 Identities = 15/54 (27%), Positives = 21/54 (38%)
 Frame = +2

Query: 119 ISRSYRNWRLFGQLLMETKNHPREIRNVFWLFWFHLPWNSEVQTNVPISQKTCG 280
           I R Y +W + G       N+ R      +L W    WN   +  +  S K CG
Sbjct: 393 IRRKYEDWMVHGAKSFTKNNNMRPPSMFEYLEWIESAWNELPKDLILQSFKGCG 446


>AC006693-4|AAF60381.2|  511|Caenorhabditis elegans Hypothetical
           protein W02H5.4 protein.
          Length = 511

 Score = 28.3 bits (60), Expect = 4.8
 Identities = 15/54 (27%), Positives = 21/54 (38%)
 Frame = +2

Query: 119 ISRSYRNWRLFGQLLMETKNHPREIRNVFWLFWFHLPWNSEVQTNVPISQKTCG 280
           I R Y +W + G       N+ R      +L W    WN   +  +  S K CG
Sbjct: 393 IRRKYEDWMVHGAKSFTKNNNMRPPSMFEYLEWIESAWNELPKDLILQSFKGCG 446


>U97014-3|AAB52427.3|  856|Caenorhabditis elegans Hypothetical
           protein T05E8.3 protein.
          Length = 856

 Score = 27.9 bits (59), Expect = 6.3
 Identities = 16/49 (32%), Positives = 26/49 (53%), Gaps = 2/49 (4%)
 Frame = +2

Query: 365 LTMKMHNVICIKKSD--YIVTPSLDTSSNQNAIQNPETKPEWVHKLIRD 505
           +T+K+H   C+ +S   YIV   L  +++  A+Q      +WV  LI D
Sbjct: 773 ITLKIHPSSCLSRSKPAYIVFSELMKTNDLFALQVTLIDGDWVRPLISD 821


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,397,802
Number of Sequences: 27780
Number of extensions: 273478
Number of successful extensions: 642
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 629
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 642
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1385109898
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)