Silkworm BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0004
         (688 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z83233-9|CAB05766.1|  405|Caenorhabditis elegans Hypothetical pr...    28   5.4  
Z92784-2|CAB07193.3| 2029|Caenorhabditis elegans Hypothetical pr...    28   7.2  
U97407-4|AAB52482.3| 1272|Caenorhabditis elegans P-glycoprotein ...    27   9.5  
EF205592-1|ABM92304.1| 1272|Caenorhabditis elegans ABC transport...    27   9.5  

>Z83233-9|CAB05766.1|  405|Caenorhabditis elegans Hypothetical
           protein K06B4.10 protein.
          Length = 405

 Score = 28.3 bits (60), Expect = 5.4
 Identities = 17/32 (53%), Positives = 20/32 (62%), Gaps = 2/32 (6%)
 Frame = -1

Query: 571 RFLLHAY-EY-MYGTYTKITFFYNFCLSVCLF 482
           +FL  A+ EY M    TK+ FF NF LS CLF
Sbjct: 178 QFLWEAFPEYSMLLPDTKLAFFKNFFLSFCLF 209


>Z92784-2|CAB07193.3| 2029|Caenorhabditis elegans Hypothetical protein
            F31C3.3 protein.
          Length = 2029

 Score = 27.9 bits (59), Expect = 7.2
 Identities = 14/37 (37%), Positives = 21/37 (56%)
 Frame = +2

Query: 158  NYFFYFNRQKIPEVNFLILYYWSSKDYVADVWNINYI 268
            N+F Y    KIPEV+F++ Y  +    + DV   N+I
Sbjct: 1918 NHFMYI---KIPEVSFVVSYKGNKDKNLIDVNQFNFI 1951


>U97407-4|AAB52482.3| 1272|Caenorhabditis elegans P-glycoprotein
           related protein 2 protein.
          Length = 1272

 Score = 27.5 bits (58), Expect = 9.5
 Identities = 22/66 (33%), Positives = 31/66 (46%), Gaps = 1/66 (1%)
 Frame = +2

Query: 485 QTDRQTKIVKKCYFSVCTVHIFICM**KAAISILQTDTPIL-FICIDRFLIITASFFLSV 661
           +  RQT IVK CY  +      +CM    A++     T I+     DR LI T  FF  +
Sbjct: 288 EVGRQTGIVKYCYMGIGVGFSNLCMYSSYALAFWYGSTLIINDPTFDRGLIFTV-FFAVL 346

Query: 662 SDNFSI 679
           S + S+
Sbjct: 347 SGSTSL 352


>EF205592-1|ABM92304.1| 1272|Caenorhabditis elegans ABC transporter
           PGP-2 protein.
          Length = 1272

 Score = 27.5 bits (58), Expect = 9.5
 Identities = 22/66 (33%), Positives = 31/66 (46%), Gaps = 1/66 (1%)
 Frame = +2

Query: 485 QTDRQTKIVKKCYFSVCTVHIFICM**KAAISILQTDTPIL-FICIDRFLIITASFFLSV 661
           +  RQT IVK CY  +      +CM    A++     T I+     DR LI T  FF  +
Sbjct: 288 EVGRQTGIVKYCYMGIGVGFSNLCMYSSYALAFWYGSTLIINDPTFDRGLIFTV-FFAVL 346

Query: 662 SDNFSI 679
           S + S+
Sbjct: 347 SGSTSL 352


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,181,157
Number of Sequences: 27780
Number of extensions: 260423
Number of successful extensions: 659
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 644
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 659
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1571291122
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)