Silkworm BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0086
         (686 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF162674-1|AAF80462.1|  575|Caenorhabditis elegans CNT-like nucl...    27   9.5  
AF016413-4|AAM29683.1|  454|Caenorhabditis elegans Hypothetical ...    27   9.5  
AF016413-3|AAB65256.3|  555|Caenorhabditis elegans Hypothetical ...    27   9.5  

>AF162674-1|AAF80462.1|  575|Caenorhabditis elegans CNT-like
           nucleoside transporter protein.
          Length = 575

 Score = 27.5 bits (58), Expect = 9.5
 Identities = 13/32 (40%), Positives = 17/32 (53%)
 Frame = -3

Query: 342 AFINDLLRFYIIKTTFDLNEMTRLIVFFFYFI 247
           AFI  LL F II +  DL  +T    + FY +
Sbjct: 127 AFIFALLAFTIIDSIHDLTRLTGFFAYVFYIL 158


>AF016413-4|AAM29683.1|  454|Caenorhabditis elegans Hypothetical
           protein F27E11.2b protein.
          Length = 454

 Score = 27.5 bits (58), Expect = 9.5
 Identities = 13/32 (40%), Positives = 17/32 (53%)
 Frame = -3

Query: 342 AFINDLLRFYIIKTTFDLNEMTRLIVFFFYFI 247
           AFI  LL F II +  DL  +T    + FY +
Sbjct: 127 AFIFALLAFTIIDSIHDLTRLTGFFAYVFYIL 158


>AF016413-3|AAB65256.3|  555|Caenorhabditis elegans Hypothetical
           protein F27E11.2a protein.
          Length = 555

 Score = 27.5 bits (58), Expect = 9.5
 Identities = 13/32 (40%), Positives = 17/32 (53%)
 Frame = -3

Query: 342 AFINDLLRFYIIKTTFDLNEMTRLIVFFFYFI 247
           AFI  LL F II +  DL  +T    + FY +
Sbjct: 127 AFIFALLAFTIIDSIHDLTRLTGFFAYVFYIL 158


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,328,289
Number of Sequences: 27780
Number of extensions: 247025
Number of successful extensions: 484
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 453
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 484
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1571291122
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)