Silkworm BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0077
         (669 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U50197-2|AAA91255.2|  624|Caenorhabditis elegans Hypothetical pr...    29   2.3  
U40030-6|AAA81135.3|  431|Caenorhabditis elegans Hypothetical pr...    28   6.9  
U40030-5|AAR12976.2|  506|Caenorhabditis elegans Hypothetical pr...    28   6.9  
AC025727-10|AAK66029.1|  707|Caenorhabditis elegans Hypothetical...    28   6.9  
Z68120-1|CAA92199.3|  711|Caenorhabditis elegans Hypothetical pr...    27   9.1  
AF218866-1|AAF67103.1|  711|Caenorhabditis elegans transmembrane...    27   9.1  

>U50197-2|AAA91255.2|  624|Caenorhabditis elegans Hypothetical
           protein F25E2.2 protein.
          Length = 624

 Score = 29.5 bits (63), Expect = 2.3
 Identities = 17/46 (36%), Positives = 22/46 (47%), Gaps = 3/46 (6%)
 Frame = -3

Query: 562 RRVPDLP---QTGRLIISDQASMMTTTNRSPAATLTRTPMTQTTKP 434
           R VP  P    T     + + +  TTT  +PA T T+ P T TT P
Sbjct: 411 REVPTTPLPTTTTTTTTTPKPTTTTTTTTTPAPTTTQKPTTTTTTP 456


>U40030-6|AAA81135.3|  431|Caenorhabditis elegans Hypothetical
           protein T13C2.3a protein.
          Length = 431

 Score = 27.9 bits (59), Expect = 6.9
 Identities = 13/37 (35%), Positives = 15/37 (40%)
 Frame = -3

Query: 544 PQTGRLIISDQASMMTTTNRSPAATLTRTPMTQTTKP 434
           P T     S   +  TTT   P  T T  P T T +P
Sbjct: 317 PSTTSTTTSTTTTTTTTTTEEPTTTTTSAPTTTTPEP 353


>U40030-5|AAR12976.2|  506|Caenorhabditis elegans Hypothetical
           protein T13C2.3b protein.
          Length = 506

 Score = 27.9 bits (59), Expect = 6.9
 Identities = 13/37 (35%), Positives = 15/37 (40%)
 Frame = -3

Query: 544 PQTGRLIISDQASMMTTTNRSPAATLTRTPMTQTTKP 434
           P T     S   +  TTT   P  T T  P T T +P
Sbjct: 392 PSTTSTTTSTTTTTTTTTTEEPTTTTTSAPTTTTPEP 428


>AC025727-10|AAK66029.1|  707|Caenorhabditis elegans Hypothetical
           protein Y73E7A.8 protein.
          Length = 707

 Score = 27.9 bits (59), Expect = 6.9
 Identities = 11/26 (42%), Positives = 15/26 (57%)
 Frame = -3

Query: 508 SMMTTTNRSPAATLTRTPMTQTTKPK 431
           ++ TTT R      T TP T TT+P+
Sbjct: 361 TLQTTTTRPQTTKTTTTPQTTTTRPQ 386


>Z68120-1|CAA92199.3|  711|Caenorhabditis elegans Hypothetical
           protein T24C2.1 protein.
          Length = 711

 Score = 27.5 bits (58), Expect = 9.1
 Identities = 14/41 (34%), Positives = 20/41 (48%)
 Frame = -3

Query: 520 SDQASMMTTTNRSPAATLTRTPMTQTTKPKAASLRSF*SPE 398
           + Q+ M TTT  S   + T TPMT +++        F  PE
Sbjct: 463 TQQSRMFTTTMPSTMISTTTTPMTSSSRTDKLPSEHFNHPE 503


>AF218866-1|AAF67103.1|  711|Caenorhabditis elegans transmembrane
           protein RAM-5 protein.
          Length = 711

 Score = 27.5 bits (58), Expect = 9.1
 Identities = 14/41 (34%), Positives = 20/41 (48%)
 Frame = -3

Query: 520 SDQASMMTTTNRSPAATLTRTPMTQTTKPKAASLRSF*SPE 398
           + Q+ M TTT  S   + T TPMT +++        F  PE
Sbjct: 463 TQQSRMFTTTMPSTMISTTTTPMTSSSRTDKLPSEHFNHPE 503


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,186,320
Number of Sequences: 27780
Number of extensions: 185519
Number of successful extensions: 603
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 584
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 603
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1508017654
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)