Silkworm BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0076
         (538 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL032646-5|CAA21682.1| 1798|Caenorhabditis elegans Hypothetical ...    29   1.6  
Z95621-1|CAB09130.1|  357|Caenorhabditis elegans Hypothetical pr...    29   2.1  

>AL032646-5|CAA21682.1| 1798|Caenorhabditis elegans Hypothetical
           protein Y54E2A.6 protein.
          Length = 1798

 Score = 29.5 bits (63), Expect = 1.6
 Identities = 15/50 (30%), Positives = 30/50 (60%)
 Frame = -3

Query: 494 ECV*KKVWTSYCALQHSFEILLLEIDFFPYQKENKTSFEMNKLQMSKRML 345
           +CV K++W + CAL+   +I+ + I +   + E K + E + L++S + L
Sbjct: 745 KCVEKQMWMNQCALRQFIQIINIPITWIE-KIERKKARESDLLELSAKDL 793


>Z95621-1|CAB09130.1|  357|Caenorhabditis elegans Hypothetical
           protein VC27A7L.1 protein.
          Length = 357

 Score = 29.1 bits (62), Expect = 2.1
 Identities = 13/34 (38%), Positives = 21/34 (61%), Gaps = 1/34 (2%)
 Frame = +3

Query: 45  PLLG*QY-GAP*RLLIKTIMTSITGVTAWTCYLC 143
           P+LG  Y GA  +L++ T +  I+ ++ WT Y C
Sbjct: 230 PILGSTYWGASTKLIVSTGIVIISIISCWTIYFC 263


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,296,999
Number of Sequences: 27780
Number of extensions: 217788
Number of successful extensions: 464
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 447
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 464
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1070714938
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)