Silkworm BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0075
         (624 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U64862-5|AAQ91890.1| 2350|Caenorhabditis elegans Lin-5 (five) in...    29   2.0  
U64862-4|AAZ32792.1| 2117|Caenorhabditis elegans Lin-5 (five) in...    29   2.0  
U64862-3|AAM69078.1| 2396|Caenorhabditis elegans Lin-5 (five) in...    29   2.0  
AF047659-3|AAC04423.2| 1650|Caenorhabditis elegans Vitellogenin ...    28   6.2  
AF047659-2|AAQ91901.1| 1651|Caenorhabditis elegans Vitellogenin ...    28   6.2  
X56213-1|CAA39670.1| 1651|Caenorhabditis elegans vitellogenin pr...    27   8.2  

>U64862-5|AAQ91890.1| 2350|Caenorhabditis elegans Lin-5 (five)
            interacting proteinprotein 1, isoform d protein.
          Length = 2350

 Score = 29.5 bits (63), Expect = 2.0
 Identities = 13/28 (46%), Positives = 17/28 (60%)
 Frame = +3

Query: 75   EQNKFRSIFIMNKKKTTD*HRTSNSKES 158
            E+N+ R      KKKTT+ H T N KE+
Sbjct: 1679 ERNELRDTLARMKKKTTETHTTINQKET 1706


>U64862-4|AAZ32792.1| 2117|Caenorhabditis elegans Lin-5 (five)
            interacting proteinprotein 1, isoform b protein.
          Length = 2117

 Score = 29.5 bits (63), Expect = 2.0
 Identities = 13/28 (46%), Positives = 17/28 (60%)
 Frame = +3

Query: 75   EQNKFRSIFIMNKKKTTD*HRTSNSKES 158
            E+N+ R      KKKTT+ H T N KE+
Sbjct: 1752 ERNELRDTLARMKKKTTETHTTINQKET 1779


>U64862-3|AAM69078.1| 2396|Caenorhabditis elegans Lin-5 (five)
            interacting proteinprotein 1, isoform a protein.
          Length = 2396

 Score = 29.5 bits (63), Expect = 2.0
 Identities = 13/28 (46%), Positives = 17/28 (60%)
 Frame = +3

Query: 75   EQNKFRSIFIMNKKKTTD*HRTSNSKES 158
            E+N+ R      KKKTT+ H T N KE+
Sbjct: 1752 ERNELRDTLARMKKKTTETHTTINQKET 1779


>AF047659-3|AAC04423.2| 1650|Caenorhabditis elegans Vitellogenin
           structural genes (yolk protein genes) protein 6, isoform
           a protein.
          Length = 1650

 Score = 27.9 bits (59), Expect = 6.2
 Identities = 13/40 (32%), Positives = 26/40 (65%)
 Frame = +3

Query: 234 HQIVISQERQTRLINELSRKLRQNTSYQCLAFTMFLV*SF 353
           HQI+ +Q   + +++++  +LRQ  + Q  AFT+ L+ S+
Sbjct: 610 HQIIYTQPEWS-VLSQIGNQLRQERNQQVRAFTLSLLRSY 648


>AF047659-2|AAQ91901.1| 1651|Caenorhabditis elegans Vitellogenin
           structural genes (yolk protein genes) protein 6, isoform
           c protein.
          Length = 1651

 Score = 27.9 bits (59), Expect = 6.2
 Identities = 13/40 (32%), Positives = 26/40 (65%)
 Frame = +3

Query: 234 HQIVISQERQTRLINELSRKLRQNTSYQCLAFTMFLV*SF 353
           HQI+ +Q   + +++++  +LRQ  + Q  AFT+ L+ S+
Sbjct: 610 HQIIYTQPEWS-VLSQIGNQLRQERNQQVRAFTLSLLRSY 648


>X56213-1|CAA39670.1| 1651|Caenorhabditis elegans vitellogenin
           protein.
          Length = 1651

 Score = 27.5 bits (58), Expect = 8.2
 Identities = 13/40 (32%), Positives = 25/40 (62%)
 Frame = +3

Query: 234 HQIVISQERQTRLINELSRKLRQNTSYQCLAFTMFLV*SF 353
           HQI+ +Q   + +++++  +LRQ    Q  AFT+ L+ S+
Sbjct: 610 HQIIYTQPEWS-VLSQIGNQLRQERDQQVRAFTLSLLRSY 648


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,107,758
Number of Sequences: 27780
Number of extensions: 217407
Number of successful extensions: 393
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 385
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 393
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1363963182
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)