Silkworm BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0065
         (516 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z70267-1|CAA94211.1|  307|Caenorhabditis elegans Hypothetical pr...    29   2.0  
AC199172-3|ABO33274.1|  306|Caenorhabditis elegans F-box a prote...    29   2.0  
AF016419-3|AAG24048.1|  529|Caenorhabditis elegans Hypothetical ...    29   2.6  
Z93394-1|CAB07703.1|  369|Caenorhabditis elegans Hypothetical pr...    27   6.0  

>Z70267-1|CAA94211.1|  307|Caenorhabditis elegans Hypothetical
           protein K04C1.1 protein.
          Length = 307

 Score = 29.1 bits (62), Expect = 2.0
 Identities = 24/87 (27%), Positives = 38/87 (43%), Gaps = 1/87 (1%)
 Frame = +2

Query: 248 NYAIQNNLSTNTYIITN*F-IFLHCKLNNLIYFHKFVFYTNLKYNENYLAPRECCLKRHL 424
           N  I  NLS N ++  N F + + C +N     H +  YT   YN      R C +   L
Sbjct: 68  NTGINGNLS-NFFLTHNEFNMNMGCPINLFHALHYYFAYTQYIYNFLISYNRFCAITSLL 126

Query: 425 TLQCQHVKKNIYFNVKMSFKLSSVEHF 505
            ++ +     I+FN      +SS ++F
Sbjct: 127 DIEKRWKPGLIFFNRSYYTYVSSKDNF 153


>AC199172-3|ABO33274.1|  306|Caenorhabditis elegans F-box a protein
           protein 31 protein.
          Length = 306

 Score = 29.1 bits (62), Expect = 2.0
 Identities = 14/39 (35%), Positives = 22/39 (56%)
 Frame = -1

Query: 372 FKLV*KTNLWK*IKLFSLQCKKINQLVIMYVFVLKLFCI 256
           F+L+   + WK  K+FS +   +N   I Y+F  + FCI
Sbjct: 180 FELITYLDQWKNSKIFSFRDSSLNCEYIEYLFHFEEFCI 218


>AF016419-3|AAG24048.1|  529|Caenorhabditis elegans Hypothetical
           protein F07G11.3 protein.
          Length = 529

 Score = 28.7 bits (61), Expect = 2.6
 Identities = 11/31 (35%), Positives = 16/31 (51%)
 Frame = +2

Query: 353 VFYTNLKYNENYLAPRECCLKRHLTLQCQHV 445
           +FY N K       P  C  K+HLT++C  +
Sbjct: 467 LFYNNRKTEITCPGPHFCDFKQHLTIKCMRI 497


>Z93394-1|CAB07703.1|  369|Caenorhabditis elegans Hypothetical
           protein Y48E1C.2 protein.
          Length = 369

 Score = 27.5 bits (58), Expect = 6.0
 Identities = 13/48 (27%), Positives = 22/48 (45%)
 Frame = +2

Query: 236 ILHLNYAIQNNLSTNTYIITN*FIFLHCKLNNLIYFHKFVFYTNLKYN 379
           ++   + +Q N      + T+ FI  +CK  N    + FVF  N  +N
Sbjct: 172 LMEQGFTVQGNEFAFFMLFTSFFIINNCKQENQFTIYPFVFDKNNSWN 219


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,750,990
Number of Sequences: 27780
Number of extensions: 201103
Number of successful extensions: 494
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 486
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 494
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 996506972
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)