Silkworm BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0046
         (569 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U10402-3|AAK95874.1|  734|Caenorhabditis elegans Hypothetical pr...    48   5e-06
AF039716-7|AAB96735.3|  617|Caenorhabditis elegans Sodium:neurot...    28   4.1  
Z80214-5|CAJ76929.1|  916|Caenorhabditis elegans Hypothetical pr...    28   5.4  
Z80214-4|CAB02263.1|  982|Caenorhabditis elegans Hypothetical pr...    28   5.4  
U12965-8|AAA20606.1|  345|Caenorhabditis elegans Hypothetical pr...    27   9.5  

>U10402-3|AAK95874.1|  734|Caenorhabditis elegans Hypothetical
           protein C34E10.5 protein.
          Length = 734

 Score = 48.0 bits (109), Expect = 5e-06
 Identities = 27/87 (31%), Positives = 43/87 (49%)
 Frame = +1

Query: 145 DMVLSPQDWTSRIVAKLSPYINVDSPSATVRQRHEDYLNEELSYCRGLGVPAIMISIHGR 324
           D+ L    W S +V K+SP+I+ DS         E++L +ELSY   LG+  + I +   
Sbjct: 111 DVQLRNDLWESYVVGKISPWIDCDSSDPAFASLSEEHLLKELSYICYLGLQTMAIELTRI 170

Query: 325 ESNNLARILQTYYETSHHPSLIWACVP 405
            S   A IL+ +  T +    +W  +P
Sbjct: 171 SSPRTAAILKKWIWTRNSRFTVWVQLP 197


>AF039716-7|AAB96735.3|  617|Caenorhabditis elegans
           Sodium:neurotransmitter symporterfamily protein 1
           protein.
          Length = 617

 Score = 28.3 bits (60), Expect = 4.1
 Identities = 14/36 (38%), Positives = 18/36 (50%)
 Frame = -2

Query: 436 CILYMFYYIA*VHMPILETDGGSFHNKFGEFWLNCC 329
           CI  MF  I  + + +L T    F + FGE W  CC
Sbjct: 381 CICTMFSVITILALSVLST----FEDAFGENWSKCC 412


>Z80214-5|CAJ76929.1|  916|Caenorhabditis elegans Hypothetical
           protein C27D8.3b protein.
          Length = 916

 Score = 27.9 bits (59), Expect = 5.4
 Identities = 11/23 (47%), Positives = 17/23 (73%)
 Frame = +1

Query: 322 RESNNLARILQTYYETSHHPSLI 390
           R +NNL +  Q ++++ HHPSLI
Sbjct: 844 RPNNNLNQQQQHHHQSHHHPSLI 866


>Z80214-4|CAB02263.1|  982|Caenorhabditis elegans Hypothetical
           protein C27D8.3a protein.
          Length = 982

 Score = 27.9 bits (59), Expect = 5.4
 Identities = 11/23 (47%), Positives = 17/23 (73%)
 Frame = +1

Query: 322 RESNNLARILQTYYETSHHPSLI 390
           R +NNL +  Q ++++ HHPSLI
Sbjct: 910 RPNNNLNQQQQHHHQSHHHPSLI 932


>U12965-8|AAA20606.1|  345|Caenorhabditis elegans Hypothetical
           protein F23F12.4 protein.
          Length = 345

 Score = 27.1 bits (57), Expect = 9.5
 Identities = 11/43 (25%), Positives = 18/43 (41%)
 Frame = -2

Query: 559 WKICRTTPKQHQHVYPNQGAHGIWTTSTRAHSKLSLLHHLQCI 431
           WK+   T  Q +H Y  Q     W       + L +L +L+ +
Sbjct: 100 WKMDENTEVQMEHYYDGQICRSYWKMKKETEAILKVLDYLRSV 142


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,599,131
Number of Sequences: 27780
Number of extensions: 273630
Number of successful extensions: 666
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 636
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 666
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1187327456
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)