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Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0043
         (712 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY130758-3|AAN61519.1| 10578|Caenorhabditis elegans 1MDa_1 prote...    34   0.12 
AY130758-2|AAN61518.1| 18519|Caenorhabditis elegans 2MDa_2 prote...    34   0.12 
AY130758-1|AAN61517.1| 18534|Caenorhabditis elegans 2MDa_1 prote...    34   0.12 
Z99281-52|CAB16507.3|  512|Caenorhabditis elegans Hypothetical p...    31   0.61 
Z49130-6|CAA88971.1|  387|Caenorhabditis elegans Hypothetical pr...    28   5.7  
Z81466-6|CAB03870.1|  545|Caenorhabditis elegans Hypothetical pr...    28   7.6  
Z75536-5|CAA99833.1|  545|Caenorhabditis elegans Hypothetical pr...    28   7.6  
Z70038-8|CAA93887.2|  618|Caenorhabditis elegans Hypothetical pr...    28   7.6  
Z68319-6|CAA92704.2|  618|Caenorhabditis elegans Hypothetical pr...    28   7.6  
U58086-1|AAC47123.1|  803|Caenorhabditis elegans CUL-4 protein.        28   7.6  
U53151-5|AAB37068.1|  476|Caenorhabditis elegans Hypothetical pr...    28   7.6  
U29536-1|AAA68791.3|  840|Caenorhabditis elegans Cullin protein ...    28   7.6  
AY428645-1|AAR27937.1|  892|Caenorhabditis elegans microsomal tr...    28   7.6  
AY220985-1|AAO65265.1|  618|Caenorhabditis elegans putative RNA ...    28   7.6  
AF100670-2|AAN73857.3|  554|Caenorhabditis elegans Hypothetical ...    28   7.6  
AF045645-4|AAC02607.3|  892|Caenorhabditis elegans Defecation su...    28   7.6  
AF000262-9|AAN60529.1|  820|Caenorhabditis elegans Hypothetical ...    28   7.6  

>AY130758-3|AAN61519.1| 10578|Caenorhabditis elegans 1MDa_1 protein
            protein.
          Length = 10578

 Score = 33.9 bits (74), Expect = 0.12
 Identities = 25/84 (29%), Positives = 40/84 (47%)
 Frame = +1

Query: 55   AQALTDEQKENLKKHRADCLSETKADEQLVNKLKTGDFKTENEPLKKYALCMLIKSQLMT 234
            A A   ++K++  KH AD   + + D++L  +      K +++ LKK A   L K     
Sbjct: 7269 ADAKLKKEKDDKLKHEADAKLQKEKDDKLKQEADAKLKKEKDDRLKKDADAKLQKE---- 7324

Query: 235  KDGKFKKDVALAKVPNAEDKLKVE 306
            KD K K++         +DKLK E
Sbjct: 7325 KDDKLKQEADAKLKKEKDDKLKHE 7348



 Score = 32.7 bits (71), Expect = 0.27
 Identities = 24/85 (28%), Positives = 40/85 (47%)
 Frame = +1

Query: 55   AQALTDEQKENLKKHRADCLSETKADEQLVNKLKTGDFKTENEPLKKYALCMLIKSQLMT 234
            A A   ++K++  K  AD   + + D++L  +      K +++ LK+ A   L K     
Sbjct: 7981 ADAKLKKEKDDKLKQEADAKLQKEKDDKLKQEADAKLKKEKDDKLKQEADAKLQKE---- 8036

Query: 235  KDGKFKKDVALAKVPNAEDKLKVEK 309
            KD  FK++         +DKLK EK
Sbjct: 8037 KDDNFKQEANAKLQKEKDDKLKQEK 8061



 Score = 31.9 bits (69), Expect = 0.47
 Identities = 24/84 (28%), Positives = 39/84 (46%)
 Frame = +1

Query: 55   AQALTDEQKENLKKHRADCLSETKADEQLVNKLKTGDFKTENEPLKKYALCMLIKSQLMT 234
            A A   ++K++  K  AD   + + D++L  +      K +++ LK+ A   L K     
Sbjct: 7429 ADAKLKKEKDDKLKQEADAKLQKEKDDKLKQEADAKLKKEKDDKLKQEADAKLKKE---- 7484

Query: 235  KDGKFKKDVALAKVPNAEDKLKVE 306
            KD K K+D         +DKLK E
Sbjct: 7485 KDDKLKQDADAKLQKEKDDKLKQE 7508



 Score = 30.7 bits (66), Expect = 1.1
 Identities = 24/85 (28%), Positives = 38/85 (44%)
 Frame = +1

Query: 55   AQALTDEQKENLKKHRADCLSETKADEQLVNKLKTGDFKTENEPLKKYALCMLIKSQLMT 234
            A A   ++K++  K  AD   + + D++L         K +++ LK  A   L K     
Sbjct: 7525 ADAKLKKEKDDKLKQEADAKLKKEKDDKLKQDADAKLKKEKDDKLKHEADAKLQKE---- 7580

Query: 235  KDGKFKKDVALAKVPNAEDKLKVEK 309
            KD  FK++         +DKLK EK
Sbjct: 7581 KDDNFKQEANAKLQKEKDDKLKQEK 7605



 Score = 30.7 bits (66), Expect = 1.1
 Identities = 25/89 (28%), Positives = 41/89 (46%), Gaps = 4/89 (4%)
 Frame = +1

Query: 55   AQALTDEQKENLKKHRADCLSETKADEQLVNKLKTGDFKTENEPLKKYALCMLIKSQ--- 225
            A A   ++K++  K  AD   + + D++L  +      K +++ LK+ A   L K +   
Sbjct: 8213 ADAKLKKEKDDKLKQEADAKLKKEKDDKLKQEADAKLKKDKDDKLKQEADAKLKKDKDDK 8272

Query: 226  -LMTKDGKFKKDVALAKVPNAEDKLKVEK 309
                 DGK KK+        A+ KLK EK
Sbjct: 8273 LKQEADGKLKKEKDNKLKQEADGKLKKEK 8301



 Score = 29.9 bits (64), Expect = 1.9
 Identities = 23/84 (27%), Positives = 38/84 (45%)
 Frame = +1

Query: 55   AQALTDEQKENLKKHRADCLSETKADEQLVNKLKTGDFKTENEPLKKYALCMLIKSQLMT 234
            A A   ++ ++  K  AD   + + D++L  +      K +++ LK+ A   L K     
Sbjct: 7189 ADAKLQKENDDKLKQEADAKLQKENDDKLKQEADAKLQKEKDDKLKQEADAKLKKE---- 7244

Query: 235  KDGKFKKDVALAKVPNAEDKLKVE 306
            KD K K+D         +DKLK E
Sbjct: 7245 KDDKLKQDADAKLQKEKDDKLKQE 7268



 Score = 29.5 bits (63), Expect = 2.5
 Identities = 23/89 (25%), Positives = 41/89 (46%), Gaps = 4/89 (4%)
 Frame = +1

Query: 55   AQALTDEQKENLKKHRADCLSETKADEQLVNKLKTGDFKTENEPLKKYALCMLIKSQ--- 225
            A A   ++K++  K  AD   + + D++L ++      K +++  K+ A   L K +   
Sbjct: 7541 ADAKLKKEKDDKLKQDADAKLKKEKDDKLKHEADAKLQKEKDDNFKQEANAKLQKEKDDK 7600

Query: 226  -LMTKDGKFKKDVALAKVPNAEDKLKVEK 309
                KD  FK++         +DKLK EK
Sbjct: 7601 LKQEKDDNFKQEANAKLQKEKDDKLKQEK 7629



 Score = 28.3 bits (60), Expect = 5.7
 Identities = 24/89 (26%), Positives = 39/89 (43%), Gaps = 4/89 (4%)
 Frame = +1

Query: 55   AQALTDEQKENLKKHRADCLSETKADEQLVNKLKTGDFKTENEPLKKYALCMLIKSQ--- 225
            A A   ++K++  K   D   +   D++L  +      K +++ LK+ A   L K +   
Sbjct: 7773 ADAKLKKEKDDKLKQETDAKLKKDKDDKLKQEADAKLKKDKDDKLKQEADAKLKKDKDDK 7832

Query: 226  -LMTKDGKFKKDVALAKVPNAEDKLKVEK 309
                 DGK KK+        A+ KLK EK
Sbjct: 7833 LKQEADGKLKKEKDNKLKQEADGKLKKEK 7861



 Score = 28.3 bits (60), Expect = 5.7
 Identities = 25/89 (28%), Positives = 40/89 (44%), Gaps = 4/89 (4%)
 Frame = +1

Query: 55   AQALTDEQKENLKKHRADCLSETKADEQLVNKLKTGDFKTENEPLKKYALCMLIKSQ--- 225
            A A   ++K++  K  AD   +   D++L  +      K +++ LK+ A   L K +   
Sbjct: 8229 ADAKLKKEKDDKLKQEADAKLKKDKDDKLKQEADAKLKKDKDDKLKQEADGKLKKEKDNK 8288

Query: 226  -LMTKDGKFKKDVALAKVPNAEDKLKVEK 309
                 DGK KK+        A+ KLK EK
Sbjct: 8289 LKQEADGKLKKEKDNKLKQEADAKLKKEK 8317


>AY130758-2|AAN61518.1| 18519|Caenorhabditis elegans 2MDa_2 protein
            protein.
          Length = 18519

 Score = 33.9 bits (74), Expect = 0.12
 Identities = 25/84 (29%), Positives = 40/84 (47%)
 Frame = +1

Query: 55   AQALTDEQKENLKKHRADCLSETKADEQLVNKLKTGDFKTENEPLKKYALCMLIKSQLMT 234
            A A   ++K++  KH AD   + + D++L  +      K +++ LKK A   L K     
Sbjct: 7289 ADAKLKKEKDDKLKHEADAKLQKEKDDKLKQEADAKLKKEKDDRLKKDADAKLQKE---- 7344

Query: 235  KDGKFKKDVALAKVPNAEDKLKVE 306
            KD K K++         +DKLK E
Sbjct: 7345 KDDKLKQEADAKLKKEKDDKLKHE 7368



 Score = 32.7 bits (71), Expect = 0.27
 Identities = 24/85 (28%), Positives = 40/85 (47%)
 Frame = +1

Query: 55   AQALTDEQKENLKKHRADCLSETKADEQLVNKLKTGDFKTENEPLKKYALCMLIKSQLMT 234
            A A   ++K++  K  AD   + + D++L  +      K +++ LK+ A   L K     
Sbjct: 8001 ADAKLKKEKDDKLKQEADAKLQKEKDDKLKQEADAKLKKEKDDKLKQEADAKLQKE---- 8056

Query: 235  KDGKFKKDVALAKVPNAEDKLKVEK 309
            KD  FK++         +DKLK EK
Sbjct: 8057 KDDNFKQEANAKLQKEKDDKLKQEK 8081



 Score = 31.9 bits (69), Expect = 0.47
 Identities = 24/84 (28%), Positives = 39/84 (46%)
 Frame = +1

Query: 55   AQALTDEQKENLKKHRADCLSETKADEQLVNKLKTGDFKTENEPLKKYALCMLIKSQLMT 234
            A A   ++K++  K  AD   + + D++L  +      K +++ LK+ A   L K     
Sbjct: 7449 ADAKLKKEKDDKLKQEADAKLQKEKDDKLKQEADAKLKKEKDDKLKQEADAKLKKE---- 7504

Query: 235  KDGKFKKDVALAKVPNAEDKLKVE 306
            KD K K+D         +DKLK E
Sbjct: 7505 KDDKLKQDADAKLQKEKDDKLKQE 7528



 Score = 30.7 bits (66), Expect = 1.1
 Identities = 24/85 (28%), Positives = 38/85 (44%)
 Frame = +1

Query: 55   AQALTDEQKENLKKHRADCLSETKADEQLVNKLKTGDFKTENEPLKKYALCMLIKSQLMT 234
            A A   ++K++  K  AD   + + D++L         K +++ LK  A   L K     
Sbjct: 7545 ADAKLKKEKDDKLKQEADAKLKKEKDDKLKQDADAKLKKEKDDKLKHEADAKLQKE---- 7600

Query: 235  KDGKFKKDVALAKVPNAEDKLKVEK 309
            KD  FK++         +DKLK EK
Sbjct: 7601 KDDNFKQEANAKLQKEKDDKLKQEK 7625



 Score = 30.7 bits (66), Expect = 1.1
 Identities = 25/89 (28%), Positives = 41/89 (46%), Gaps = 4/89 (4%)
 Frame = +1

Query: 55   AQALTDEQKENLKKHRADCLSETKADEQLVNKLKTGDFKTENEPLKKYALCMLIKSQ--- 225
            A A   ++K++  K  AD   + + D++L  +      K +++ LK+ A   L K +   
Sbjct: 8233 ADAKLKKEKDDKLKQEADAKLKKEKDDKLKQEADAKLKKDKDDKLKQEADAKLKKDKDDK 8292

Query: 226  -LMTKDGKFKKDVALAKVPNAEDKLKVEK 309
                 DGK KK+        A+ KLK EK
Sbjct: 8293 LKQEADGKLKKEKDNKLKQEADGKLKKEK 8321



 Score = 29.9 bits (64), Expect = 1.9
 Identities = 23/84 (27%), Positives = 38/84 (45%)
 Frame = +1

Query: 55   AQALTDEQKENLKKHRADCLSETKADEQLVNKLKTGDFKTENEPLKKYALCMLIKSQLMT 234
            A A   ++ ++  K  AD   + + D++L  +      K +++ LK+ A   L K     
Sbjct: 7209 ADAKLQKENDDKLKQEADAKLQKENDDKLKQEADAKLQKEKDDKLKQEADAKLKKE---- 7264

Query: 235  KDGKFKKDVALAKVPNAEDKLKVE 306
            KD K K+D         +DKLK E
Sbjct: 7265 KDDKLKQDADAKLQKEKDDKLKQE 7288



 Score = 29.5 bits (63), Expect = 2.5
 Identities = 23/89 (25%), Positives = 41/89 (46%), Gaps = 4/89 (4%)
 Frame = +1

Query: 55   AQALTDEQKENLKKHRADCLSETKADEQLVNKLKTGDFKTENEPLKKYALCMLIKSQ--- 225
            A A   ++K++  K  AD   + + D++L ++      K +++  K+ A   L K +   
Sbjct: 7561 ADAKLKKEKDDKLKQDADAKLKKEKDDKLKHEADAKLQKEKDDNFKQEANAKLQKEKDDK 7620

Query: 226  -LMTKDGKFKKDVALAKVPNAEDKLKVEK 309
                KD  FK++         +DKLK EK
Sbjct: 7621 LKQEKDDNFKQEANAKLQKEKDDKLKQEK 7649



 Score = 28.3 bits (60), Expect = 5.7
 Identities = 24/89 (26%), Positives = 39/89 (43%), Gaps = 4/89 (4%)
 Frame = +1

Query: 55   AQALTDEQKENLKKHRADCLSETKADEQLVNKLKTGDFKTENEPLKKYALCMLIKSQ--- 225
            A A   ++K++  K   D   +   D++L  +      K +++ LK+ A   L K +   
Sbjct: 7793 ADAKLKKEKDDKLKQETDAKLKKDKDDKLKQEADAKLKKDKDDKLKQEADAKLKKDKDDK 7852

Query: 226  -LMTKDGKFKKDVALAKVPNAEDKLKVEK 309
                 DGK KK+        A+ KLK EK
Sbjct: 7853 LKQEADGKLKKEKDNKLKQEADGKLKKEK 7881



 Score = 28.3 bits (60), Expect = 5.7
 Identities = 25/89 (28%), Positives = 40/89 (44%), Gaps = 4/89 (4%)
 Frame = +1

Query: 55   AQALTDEQKENLKKHRADCLSETKADEQLVNKLKTGDFKTENEPLKKYALCMLIKSQ--- 225
            A A   ++K++  K  AD   +   D++L  +      K +++ LK+ A   L K +   
Sbjct: 8249 ADAKLKKEKDDKLKQEADAKLKKDKDDKLKQEADAKLKKDKDDKLKQEADGKLKKEKDNK 8308

Query: 226  -LMTKDGKFKKDVALAKVPNAEDKLKVEK 309
                 DGK KK+        A+ KLK EK
Sbjct: 8309 LKQEADGKLKKEKDNKLKQEADAKLKKEK 8337


>AY130758-1|AAN61517.1| 18534|Caenorhabditis elegans 2MDa_1 protein
            protein.
          Length = 18534

 Score = 33.9 bits (74), Expect = 0.12
 Identities = 25/84 (29%), Positives = 40/84 (47%)
 Frame = +1

Query: 55   AQALTDEQKENLKKHRADCLSETKADEQLVNKLKTGDFKTENEPLKKYALCMLIKSQLMT 234
            A A   ++K++  KH AD   + + D++L  +      K +++ LKK A   L K     
Sbjct: 7289 ADAKLKKEKDDKLKHEADAKLQKEKDDKLKQEADAKLKKEKDDRLKKDADAKLQKE---- 7344

Query: 235  KDGKFKKDVALAKVPNAEDKLKVE 306
            KD K K++         +DKLK E
Sbjct: 7345 KDDKLKQEADAKLKKEKDDKLKHE 7368



 Score = 32.7 bits (71), Expect = 0.27
 Identities = 24/85 (28%), Positives = 40/85 (47%)
 Frame = +1

Query: 55   AQALTDEQKENLKKHRADCLSETKADEQLVNKLKTGDFKTENEPLKKYALCMLIKSQLMT 234
            A A   ++K++  K  AD   + + D++L  +      K +++ LK+ A   L K     
Sbjct: 8001 ADAKLKKEKDDKLKQEADAKLQKEKDDKLKQEADAKLKKEKDDKLKQEADAKLQKE---- 8056

Query: 235  KDGKFKKDVALAKVPNAEDKLKVEK 309
            KD  FK++         +DKLK EK
Sbjct: 8057 KDDNFKQEANAKLQKEKDDKLKQEK 8081



 Score = 31.9 bits (69), Expect = 0.47
 Identities = 24/84 (28%), Positives = 39/84 (46%)
 Frame = +1

Query: 55   AQALTDEQKENLKKHRADCLSETKADEQLVNKLKTGDFKTENEPLKKYALCMLIKSQLMT 234
            A A   ++K++  K  AD   + + D++L  +      K +++ LK+ A   L K     
Sbjct: 7449 ADAKLKKEKDDKLKQEADAKLQKEKDDKLKQEADAKLKKEKDDKLKQEADAKLKKE---- 7504

Query: 235  KDGKFKKDVALAKVPNAEDKLKVE 306
            KD K K+D         +DKLK E
Sbjct: 7505 KDDKLKQDADAKLQKEKDDKLKQE 7528



 Score = 30.7 bits (66), Expect = 1.1
 Identities = 24/85 (28%), Positives = 38/85 (44%)
 Frame = +1

Query: 55   AQALTDEQKENLKKHRADCLSETKADEQLVNKLKTGDFKTENEPLKKYALCMLIKSQLMT 234
            A A   ++K++  K  AD   + + D++L         K +++ LK  A   L K     
Sbjct: 7545 ADAKLKKEKDDKLKQEADAKLKKEKDDKLKQDADAKLKKEKDDKLKHEADAKLQKE---- 7600

Query: 235  KDGKFKKDVALAKVPNAEDKLKVEK 309
            KD  FK++         +DKLK EK
Sbjct: 7601 KDDNFKQEANAKLQKEKDDKLKQEK 7625



 Score = 30.7 bits (66), Expect = 1.1
 Identities = 25/89 (28%), Positives = 41/89 (46%), Gaps = 4/89 (4%)
 Frame = +1

Query: 55   AQALTDEQKENLKKHRADCLSETKADEQLVNKLKTGDFKTENEPLKKYALCMLIKSQ--- 225
            A A   ++K++  K  AD   + + D++L  +      K +++ LK+ A   L K +   
Sbjct: 8233 ADAKLKKEKDDKLKQEADAKLKKEKDDKLKQEADAKLKKDKDDKLKQEADAKLKKDKDDK 8292

Query: 226  -LMTKDGKFKKDVALAKVPNAEDKLKVEK 309
                 DGK KK+        A+ KLK EK
Sbjct: 8293 LKQEADGKLKKEKDNKLKQEADGKLKKEK 8321



 Score = 29.9 bits (64), Expect = 1.9
 Identities = 23/84 (27%), Positives = 38/84 (45%)
 Frame = +1

Query: 55   AQALTDEQKENLKKHRADCLSETKADEQLVNKLKTGDFKTENEPLKKYALCMLIKSQLMT 234
            A A   ++ ++  K  AD   + + D++L  +      K +++ LK+ A   L K     
Sbjct: 7209 ADAKLQKENDDKLKQEADAKLQKENDDKLKQEADAKLQKEKDDKLKQEADAKLKKE---- 7264

Query: 235  KDGKFKKDVALAKVPNAEDKLKVE 306
            KD K K+D         +DKLK E
Sbjct: 7265 KDDKLKQDADAKLQKEKDDKLKQE 7288



 Score = 29.5 bits (63), Expect = 2.5
 Identities = 23/89 (25%), Positives = 41/89 (46%), Gaps = 4/89 (4%)
 Frame = +1

Query: 55   AQALTDEQKENLKKHRADCLSETKADEQLVNKLKTGDFKTENEPLKKYALCMLIKSQ--- 225
            A A   ++K++  K  AD   + + D++L ++      K +++  K+ A   L K +   
Sbjct: 7561 ADAKLKKEKDDKLKQDADAKLKKEKDDKLKHEADAKLQKEKDDNFKQEANAKLQKEKDDK 7620

Query: 226  -LMTKDGKFKKDVALAKVPNAEDKLKVEK 309
                KD  FK++         +DKLK EK
Sbjct: 7621 LKQEKDDNFKQEANAKLQKEKDDKLKQEK 7649



 Score = 28.3 bits (60), Expect = 5.7
 Identities = 24/89 (26%), Positives = 39/89 (43%), Gaps = 4/89 (4%)
 Frame = +1

Query: 55   AQALTDEQKENLKKHRADCLSETKADEQLVNKLKTGDFKTENEPLKKYALCMLIKSQ--- 225
            A A   ++K++  K   D   +   D++L  +      K +++ LK+ A   L K +   
Sbjct: 7793 ADAKLKKEKDDKLKQETDAKLKKDKDDKLKQEADAKLKKDKDDKLKQEADAKLKKDKDDK 7852

Query: 226  -LMTKDGKFKKDVALAKVPNAEDKLKVEK 309
                 DGK KK+        A+ KLK EK
Sbjct: 7853 LKQEADGKLKKEKDNKLKQEADGKLKKEK 7881



 Score = 28.3 bits (60), Expect = 5.7
 Identities = 25/89 (28%), Positives = 40/89 (44%), Gaps = 4/89 (4%)
 Frame = +1

Query: 55   AQALTDEQKENLKKHRADCLSETKADEQLVNKLKTGDFKTENEPLKKYALCMLIKSQ--- 225
            A A   ++K++  K  AD   +   D++L  +      K +++ LK+ A   L K +   
Sbjct: 8249 ADAKLKKEKDDKLKQEADAKLKKDKDDKLKQEADAKLKKDKDDKLKQEADGKLKKEKDNK 8308

Query: 226  -LMTKDGKFKKDVALAKVPNAEDKLKVEK 309
                 DGK KK+        A+ KLK EK
Sbjct: 8309 LKQEADGKLKKEKDNKLKQEADAKLKKEK 8337


>Z99281-52|CAB16507.3|  512|Caenorhabditis elegans Hypothetical
           protein Y57G11C.5 protein.
          Length = 512

 Score = 31.5 bits (68), Expect = 0.61
 Identities = 14/38 (36%), Positives = 24/38 (63%)
 Frame = -1

Query: 472 RPSYLTLMRYGTVGLDYVFTRKERASGLSRGSISHNSR 359
           RPS LT   YG+ GL+  +  K R +GL+R + +++ +
Sbjct: 160 RPSLLTTNGYGSAGLNATWIGKTRKAGLNRFACTYHKK 197


>Z49130-6|CAA88971.1|  387|Caenorhabditis elegans Hypothetical
           protein T06D8.8 protein.
          Length = 387

 Score = 28.3 bits (60), Expect = 5.7
 Identities = 22/69 (31%), Positives = 36/69 (52%), Gaps = 6/69 (8%)
 Frame = +1

Query: 148 KLKTGDFKTENEPLKKYALCMLIKSQLMTKDGKFKKDVALAKVPNA--EDKLKVEKL--- 312
           +L   +++    PL+   +C+ I   + TKD K K    L+K+ N   +DK+ V +L   
Sbjct: 61  RLFVAEWELRVNPLQLVEICISIAQNIATKD-KQKSMEFLSKIGNVINKDKIAVARLHTG 119

Query: 313 -IDACLANK 336
            I+A L NK
Sbjct: 120 EIEARLENK 128


>Z81466-6|CAB03870.1|  545|Caenorhabditis elegans Hypothetical
           protein F18C12.3 protein.
          Length = 545

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 15/47 (31%), Positives = 24/47 (51%)
 Frame = +1

Query: 169 KTENEPLKKYALCMLIKSQLMTKDGKFKKDVALAKVPNAEDKLKVEK 309
           K  NE +   A C+  K+QLM++  + KK +   K    + K K E+
Sbjct: 110 KLNNELVALRATCLTAKNQLMSRIVRQKKQLESKKSQKVDGKSKEER 156


>Z75536-5|CAA99833.1|  545|Caenorhabditis elegans Hypothetical
           protein F18C12.3 protein.
          Length = 545

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 15/47 (31%), Positives = 24/47 (51%)
 Frame = +1

Query: 169 KTENEPLKKYALCMLIKSQLMTKDGKFKKDVALAKVPNAEDKLKVEK 309
           K  NE +   A C+  K+QLM++  + KK +   K    + K K E+
Sbjct: 110 KLNNELVALRATCLTAKNQLMSRIVRQKKQLESKKSQKVDGKSKEER 156


>Z70038-8|CAA93887.2|  618|Caenorhabditis elegans Hypothetical
           protein ZK1067.6 protein.
          Length = 618

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 15/41 (36%), Positives = 19/41 (46%)
 Frame = +3

Query: 321 LPGQQRQQPSPNSLELCEMLPRERPEARSFLVNT*SNPTVP 443
           L GQQ Q P P  L     LP + P+ + F  +  S P  P
Sbjct: 481 LVGQQHQVPPPAPLGFMGQLPPQAPQPQQFWSSYPSPPISP 521


>Z68319-6|CAA92704.2|  618|Caenorhabditis elegans Hypothetical
           protein ZK1067.6 protein.
          Length = 618

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 15/41 (36%), Positives = 19/41 (46%)
 Frame = +3

Query: 321 LPGQQRQQPSPNSLELCEMLPRERPEARSFLVNT*SNPTVP 443
           L GQQ Q P P  L     LP + P+ + F  +  S P  P
Sbjct: 481 LVGQQHQVPPPAPLGFMGQLPPQAPQPQQFWSSYPSPPISP 521


>U58086-1|AAC47123.1|  803|Caenorhabditis elegans CUL-4 protein.
          Length = 803

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 12/29 (41%), Positives = 20/29 (68%)
 Frame = +1

Query: 106 DCLSETKADEQLVNKLKTGDFKTENEPLK 192
           D +SE  A ++ V+ + TG FK+ N+P+K
Sbjct: 390 DLVSELLAFKKKVDFIMTGSFKSANDPVK 418


>U53151-5|AAB37068.1|  476|Caenorhabditis elegans Hypothetical
           protein T05B11.4 protein.
          Length = 476

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 18/58 (31%), Positives = 26/58 (44%)
 Frame = -3

Query: 254 FLNFPSLVISCDLISIHRAYFFNGSFSVLKSPVFSLFTNCSSAFVSERQSALCFFKFS 81
           F    + +  C L+ + R Y F     +L   VF +FTN    F S R S  C+ + S
Sbjct: 6   FFQIDNFLKICSLVEMQRIYQFILIIILLLLLVFDIFTNKPELFPSSRISP-CYTESS 62


>U29536-1|AAA68791.3|  840|Caenorhabditis elegans Cullin protein 4
           protein.
          Length = 840

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 12/29 (41%), Positives = 20/29 (68%)
 Frame = +1

Query: 106 DCLSETKADEQLVNKLKTGDFKTENEPLK 192
           D +SE  A ++ V+ + TG FK+ N+P+K
Sbjct: 427 DLVSELLAFKKKVDFIMTGSFKSANDPVK 455


>AY428645-1|AAR27937.1|  892|Caenorhabditis elegans microsomal
           triglyceride transferprotein protein.
          Length = 892

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 20/53 (37%), Positives = 28/53 (52%), Gaps = 2/53 (3%)
 Frame = +1

Query: 28  IVFVVCVVLAQALTDEQKENLKKHRADCL-SETKADEQLVNKLKTGD-FKTEN 180
           +   V V LA    DE K+NL+KH  D   ++ K +E  V  LK    F+TE+
Sbjct: 10  LAVTVGVCLAVPDLDEIKKNLRKHGPDYYKNQPKMNENTVRLLKVDYWFRTES 62


>AY220985-1|AAO65265.1|  618|Caenorhabditis elegans putative RNA
           binding protein SYM-2 protein.
          Length = 618

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 15/41 (36%), Positives = 19/41 (46%)
 Frame = +3

Query: 321 LPGQQRQQPSPNSLELCEMLPRERPEARSFLVNT*SNPTVP 443
           L GQQ Q P P  L     LP + P+ + F  +  S P  P
Sbjct: 481 LVGQQHQVPPPAPLGFMGQLPPQAPQPQQFWSSYPSPPISP 521


>AF100670-2|AAN73857.3|  554|Caenorhabditis elegans Hypothetical
           protein M4.1 protein.
          Length = 554

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 16/50 (32%), Positives = 26/50 (52%), Gaps = 2/50 (4%)
 Frame = +1

Query: 40  VCVVLAQALTDEQKENLKKHRADCLSETKA--DEQLVNKLKTGDFKTENE 183
           V     + LTD Q++NLK  ++  ++ET +     L N + +G F  E E
Sbjct: 330 VVTTYEEKLTDLQQKNLKLSKSCVINETASGLSRLLANSINSGSFIDEPE 379


>AF045645-4|AAC02607.3|  892|Caenorhabditis elegans Defecation
           suppressor of clk-1protein 4 protein.
          Length = 892

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 20/53 (37%), Positives = 28/53 (52%), Gaps = 2/53 (3%)
 Frame = +1

Query: 28  IVFVVCVVLAQALTDEQKENLKKHRADCL-SETKADEQLVNKLKTGD-FKTEN 180
           +   V V LA    DE K+NL+KH  D   ++ K +E  V  LK    F+TE+
Sbjct: 10  LAVTVGVCLAVPDLDEIKKNLRKHGPDYYKNQPKMNENTVRLLKVDYWFRTES 62


>AF000262-9|AAN60529.1|  820|Caenorhabditis elegans Hypothetical
           protein C48E7.8 protein.
          Length = 820

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 30/100 (30%), Positives = 45/100 (45%), Gaps = 2/100 (2%)
 Frame = -3

Query: 299 FNLSSALGTLARATSFLNFPSLVISCDLISIHRA--YFFNGSFSVLKSPVFSLFTNCSSA 126
           F  S AL     AT  L+   LV      S+  +  Y F  S   +K  + +LF  CSS 
Sbjct: 285 FAPSIALTYRTLATISLSNSLLVNILSAFSVRSSLTYLFRNSTRDVK--LVNLFRVCSSF 342

Query: 125 FVSERQSALCFFKFSFCSSVRA*AKTTQTTNTIKVFMMHS 6
           +V    S  C F   F  ++R+ A+  ++    + FMM+S
Sbjct: 343 WVIF--SHTCLFSLHFTDTIRSVARKGESVVGWRNFMMNS 380


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,920,159
Number of Sequences: 27780
Number of extensions: 340776
Number of successful extensions: 1179
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 1081
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1173
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1655655746
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

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