Silkworm BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0038
         (337 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z68315-8|CAA92674.1|  142|Caenorhabditis elegans Hypothetical pr...   139   4e-34
Z68315-10|CAD59149.1|  109|Caenorhabditis elegans Hypothetical p...   131   1e-31
Z68315-9|CAA92678.1|  106|Caenorhabditis elegans Hypothetical pr...   131   1e-31
Z81075-7|CAI79229.1|  342|Caenorhabditis elegans Hypothetical pr...    28   1.9  
Z81075-3|CAI79228.1|  192|Caenorhabditis elegans Hypothetical pr...    28   1.9  
Z81075-2|CAB03048.1|  368|Caenorhabditis elegans Hypothetical pr...    28   1.9  
AL032645-3|CAI79264.1|  342|Caenorhabditis elegans Hypothetical ...    28   1.9  
Z50741-2|CAA90610.1|  383|Caenorhabditis elegans Hypothetical pr...    27   3.3  
U23513-3|AAB36862.1|  209|Caenorhabditis elegans Hypothetical pr...    27   3.3  
U21324-6|AAA62562.1|  287|Caenorhabditis elegans Hypothetical pr...    26   5.8  
AL032631-7|CAB63337.2|  855|Caenorhabditis elegans Hypothetical ...    26   5.8  
AF039716-2|AAB96737.1|  462|Caenorhabditis elegans Hypothetical ...    26   5.8  
Z81542-3|CAB04415.1|  308|Caenorhabditis elegans Hypothetical pr...    26   7.7  

>Z68315-8|CAA92674.1|  142|Caenorhabditis elegans Hypothetical
           protein F28C6.7a protein.
          Length = 142

 Score =  139 bits (337), Expect = 4e-34
 Identities = 64/112 (57%), Positives = 88/112 (78%)
 Frame = +2

Query: 2   MKFNKQVTSSRRKNRKRHFSAPSHIRRVLMSSPLSKELRQKFNVKSMPIRKDDEVQVVRG 181
           MK N  V+S   K+RK HF+APSH RR +MS+PL+KELR K  ++++PIR DDEV V+RG
Sbjct: 1   MKVNPFVSSDSGKSRKAHFNAPSHERRRIMSAPLTKELRTKHGIRAIPIRTDDEVVVMRG 60

Query: 182 HYKGQQVGKVMQVYRKKFVVYIERIQREKANGATAYVGIHPSKCVIVKLKMN 337
            +KG   G+V++ YRKKFV++I++I REKANG+T ++GIHPSK  I KLK++
Sbjct: 61  RHKG-NTGRVLRCYRKKFVIHIDKITREKANGSTVHIGIHPSKVAITKLKLD 111


>Z68315-10|CAD59149.1|  109|Caenorhabditis elegans Hypothetical
           protein F28C6.7c protein.
          Length = 109

 Score =  131 bits (317), Expect = 1e-31
 Identities = 60/103 (58%), Positives = 82/103 (79%)
 Frame = +2

Query: 2   MKFNKQVTSSRRKNRKRHFSAPSHIRRVLMSSPLSKELRQKFNVKSMPIRKDDEVQVVRG 181
           MK N  V+S   K+RK HF+APSH RR +MS+PL+KELR K  ++++PIR DDEV V+RG
Sbjct: 1   MKVNPFVSSDSGKSRKAHFNAPSHERRRIMSAPLTKELRTKHGIRAIPIRTDDEVVVMRG 60

Query: 182 HYKGQQVGKVMQVYRKKFVVYIERIQREKANGATAYVGIHPSK 310
            +KG   G+V++ YRKKFV++I++I REKANG+T ++GIHPSK
Sbjct: 61  RHKG-NTGRVLRCYRKKFVIHIDKITREKANGSTVHIGIHPSK 102


>Z68315-9|CAA92678.1|  106|Caenorhabditis elegans Hypothetical
           protein F28C6.7b protein.
          Length = 106

 Score =  131 bits (317), Expect = 1e-31
 Identities = 60/103 (58%), Positives = 82/103 (79%)
 Frame = +2

Query: 2   MKFNKQVTSSRRKNRKRHFSAPSHIRRVLMSSPLSKELRQKFNVKSMPIRKDDEVQVVRG 181
           MK N  V+S   K+RK HF+APSH RR +MS+PL+KELR K  ++++PIR DDEV V+RG
Sbjct: 1   MKVNPFVSSDSGKSRKAHFNAPSHERRRIMSAPLTKELRTKHGIRAIPIRTDDEVVVMRG 60

Query: 182 HYKGQQVGKVMQVYRKKFVVYIERIQREKANGATAYVGIHPSK 310
            +KG   G+V++ YRKKFV++I++I REKANG+T ++GIHPSK
Sbjct: 61  RHKG-NTGRVLRCYRKKFVIHIDKITREKANGSTVHIGIHPSK 102


>Z81075-7|CAI79229.1|  342|Caenorhabditis elegans Hypothetical
           protein F35C12.3c protein.
          Length = 342

 Score = 27.9 bits (59), Expect = 1.9
 Identities = 10/23 (43%), Positives = 14/23 (60%)
 Frame = -3

Query: 272 WPFLFESSQCIQQTFYDTPASLC 204
           W  +F  ++CI  TF + P SLC
Sbjct: 217 WRCMFAQNKCIGTTFQNIPISLC 239


>Z81075-3|CAI79228.1|  192|Caenorhabditis elegans Hypothetical
           protein F35C12.3b protein.
          Length = 192

 Score = 27.9 bits (59), Expect = 1.9
 Identities = 10/23 (43%), Positives = 14/23 (60%)
 Frame = -3

Query: 272 WPFLFESSQCIQQTFYDTPASLC 204
           W  +F  ++CI  TF + P SLC
Sbjct: 67  WRCMFAQNKCIGTTFQNIPISLC 89


>Z81075-2|CAB03048.1|  368|Caenorhabditis elegans Hypothetical
           protein F35C12.3a protein.
          Length = 368

 Score = 27.9 bits (59), Expect = 1.9
 Identities = 10/23 (43%), Positives = 14/23 (60%)
 Frame = -3

Query: 272 WPFLFESSQCIQQTFYDTPASLC 204
           W  +F  ++CI  TF + P SLC
Sbjct: 243 WRCMFAQNKCIGTTFQNIPISLC 265


>AL032645-3|CAI79264.1|  342|Caenorhabditis elegans Hypothetical
           protein F35C12.3c protein.
          Length = 342

 Score = 27.9 bits (59), Expect = 1.9
 Identities = 10/23 (43%), Positives = 14/23 (60%)
 Frame = -3

Query: 272 WPFLFESSQCIQQTFYDTPASLC 204
           W  +F  ++CI  TF + P SLC
Sbjct: 217 WRCMFAQNKCIGTTFQNIPISLC 239


>Z50741-2|CAA90610.1|  383|Caenorhabditis elegans Hypothetical
           protein F55G7.2 protein.
          Length = 383

 Score = 27.1 bits (57), Expect = 3.3
 Identities = 17/63 (26%), Positives = 29/63 (46%)
 Frame = +2

Query: 5   KFNKQVTSSRRKNRKRHFSAPSHIRRVLMSSPLSKELRQKFNVKSMPIRKDDEVQVVRGH 184
           KFN+ V   RR N K+    P H  +   +  +++++ +     S+P  K      +  H
Sbjct: 94  KFNEAVALFRRDNPKKQLLLPKHWDQSTCTQQVAQKITEIAKDLSVPYPKK-----LNQH 148

Query: 185 YKG 193
           YKG
Sbjct: 149 YKG 151


>U23513-3|AAB36862.1|  209|Caenorhabditis elegans Hypothetical
           protein D2021.8 protein.
          Length = 209

 Score = 27.1 bits (57), Expect = 3.3
 Identities = 15/37 (40%), Positives = 25/37 (67%), Gaps = 2/37 (5%)
 Frame = -1

Query: 202 NLL--AFVVSTYNLNFIVFANRHGFYIEFLS*FLRQG 98
           NLL  A VV ++NL+ ++ A +HG ++E +   L+QG
Sbjct: 11  NLLKPAVVVDSFNLHAVISATQHG-HVESVEAALKQG 46


>U21324-6|AAA62562.1|  287|Caenorhabditis elegans Hypothetical
           protein C35D10.6 protein.
          Length = 287

 Score = 26.2 bits (55), Expect = 5.8
 Identities = 15/33 (45%), Positives = 19/33 (57%), Gaps = 5/33 (15%)
 Frame = +2

Query: 53  HFSAPSHI-----RRVLMSSPLSKELRQKFNVK 136
           HF A S +     R+ L   PL KEL QK+NV+
Sbjct: 193 HFQAYSSLGSPTYRKQLSEEPLIKELAQKYNVE 225


>AL032631-7|CAB63337.2|  855|Caenorhabditis elegans Hypothetical
           protein Y106G6H.5 protein.
          Length = 855

 Score = 26.2 bits (55), Expect = 5.8
 Identities = 11/38 (28%), Positives = 18/38 (47%)
 Frame = -3

Query: 299 ECRHMLLHHWPFLFESSQCIQQTFYDTPASLCQPVGLC 186
           +C+  +L  WPFL   ++ +Q   +        PV LC
Sbjct: 137 DCQSEMLERWPFL--QTEDVQLALFSPEDVALDPVALC 172


>AF039716-2|AAB96737.1|  462|Caenorhabditis elegans Hypothetical
           protein W03G9.3 protein.
          Length = 462

 Score = 26.2 bits (55), Expect = 5.8
 Identities = 14/63 (22%), Positives = 27/63 (42%)
 Frame = +2

Query: 14  KQVTSSRRKNRKRHFSAPSHIRRVLMSSPLSKELRQKFNVKSMPIRKDDEVQVVRGHYKG 193
           K++ S  R   K   ++P H++  + S  L  + +      +    K D +   R H KG
Sbjct: 313 KEIFSDTRLELKLELTSPVHMKMDVFSVKLEPQQKTVLPEPTKETPKTDALLTPRSHIKG 372

Query: 194 QQV 202
           + +
Sbjct: 373 RSM 375


>Z81542-3|CAB04415.1|  308|Caenorhabditis elegans Hypothetical
           protein F49A5.4 protein.
          Length = 308

 Score = 25.8 bits (54), Expect = 7.7
 Identities = 16/58 (27%), Positives = 25/58 (43%), Gaps = 9/58 (15%)
 Frame = +1

Query: 172 CTWTLQRPT---------GWQSDAGVS*KVCCIH*EDSKRKGQWCNSICRHSPFKVCD 318
           CTW LQ  T         GW S+     K+C     +  + G+W ++ C  +   VC+
Sbjct: 126 CTWDLQSGTTAVYNNFADGWPSNED---KICNYFMTNGTQAGKWASASCTETMSFVCE 180


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,931,647
Number of Sequences: 27780
Number of extensions: 164756
Number of successful extensions: 500
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 488
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 497
length of database: 12,740,198
effective HSP length: 72
effective length of database: 10,740,038
effective search space used: 418861482
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)