Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brS-0002
(700 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z70203-4|CAA94107.1| 322|Caenorhabditis elegans Hypothetical pr... 297 5e-81
AF003389-2|AAC71132.1| 321|Caenorhabditis elegans Hypothetical ... 292 2e-79
AL021493-6|CAA16394.2| 781|Caenorhabditis elegans Hypothetical ... 29 2.4
U37429-10|AAN63413.2| 100|Caenorhabditis elegans Hypothetical p... 29 3.2
Z81117-4|CAB03319.1| 249|Caenorhabditis elegans Hypothetical pr... 28 7.4
U80442-3|AAB37665.1| 333|Caenorhabditis elegans Hypothetical pr... 27 9.8
U10438-12|ABB88244.1| 325|Caenorhabditis elegans Hypothetical p... 27 9.8
>Z70203-4|CAA94107.1| 322|Caenorhabditis elegans Hypothetical
protein C05G5.4 protein.
Length = 322
Score = 297 bits (729), Expect = 5e-81
Identities = 137/197 (69%), Positives = 154/197 (78%)
Frame = +2
Query: 110 YAETRKNLILTSETKVIVQGFTGKQGTFHSQQALDYGTKVVGGVSPKKAGTEHLGKPVFG 289
Y T NL + +TKVIVQGFTGKQGTFH +Q L+Y TKVVGGV+ KAGTEHLG PVF
Sbjct: 21 YNSTYNNLKINKDTKVIVQGFTGKQGTFHGKQMLEYNTKVVGGVNANKAGTEHLGLPVFK 80
Query: 290 TVKEAKAGTGATASVIYVPPPGXXXXXXXXXXXXMPLIVCITEGVPQHDMVRVKHALLRQ 469
V EA+ TGA ASVIYVP +PL+VCITEG+PQHDMVRVK LL+Q
Sbjct: 81 NVSEARNKTGADASVIYVPASAAGSAIEEAMDAEIPLVVCITEGIPQHDMVRVKSRLLKQ 140
Query: 470 NKSRLVGPNCPGIIAPEKCKIGIMPAAVHKRGCIGVVSRSGTLTYEACHQTTITGLGQTL 649
NK+RLVGPNCPGII+ ++CKIGIMP +HKRGCIG+VSRSGTLTYEA HQTT G GQTL
Sbjct: 141 NKTRLVGPNCPGIISADQCKIGIMPGHIHKRGCIGIVSRSGTLTYEAVHQTTQVGFGQTL 200
Query: 650 CVGIGGDPFNGTDFIDC 700
CVGIGGDPFNGT+FIDC
Sbjct: 201 CVGIGGDPFNGTNFIDC 217
>AF003389-2|AAC71132.1| 321|Caenorhabditis elegans Hypothetical
protein F23H11.3 protein.
Length = 321
Score = 292 bits (716), Expect = 2e-79
Identities = 135/197 (68%), Positives = 154/197 (78%)
Frame = +2
Query: 110 YAETRKNLILTSETKVIVQGFTGKQGTFHSQQALDYGTKVVGGVSPKKAGTEHLGKPVFG 289
Y +TR NL++ TKVIVQGFTG+QGTFHS+Q L+Y T +VGGVSP KAG HLG PVFG
Sbjct: 22 YNDTRNNLMINKSTKVIVQGFTGRQGTFHSKQMLEYNTNLVGGVSPNKAGQTHLGLPVFG 81
Query: 290 TVKEAKAGTGATASVIYVPPPGXXXXXXXXXXXXMPLIVCITEGVPQHDMVRVKHALLRQ 469
+V EAK TGA A+VIYVP G + LIV ITEG+PQ DMVRVK+ LL+Q
Sbjct: 82 SVAEAKDRTGADATVIYVPAAGAARAIHEAMDAEIGLIVAITEGIPQQDMVRVKNRLLKQ 141
Query: 470 NKSRLVGPNCPGIIAPEKCKIGIMPAAVHKRGCIGVVSRSGTLTYEACHQTTITGLGQTL 649
NKSRL+GPNCPGIIA CKIGIMP +HK+GCIG+VSRSGTLTYEA HQTT GLGQT
Sbjct: 142 NKSRLLGPNCPGIIASGDCKIGIMPGHIHKKGCIGIVSRSGTLTYEAVHQTTTVGLGQTR 201
Query: 650 CVGIGGDPFNGTDFIDC 700
C+GIGGDPFNGT+FIDC
Sbjct: 202 CIGIGGDPFNGTNFIDC 218
>AL021493-6|CAA16394.2| 781|Caenorhabditis elegans Hypothetical
protein Y51A2B.6 protein.
Length = 781
Score = 29.5 bits (63), Expect = 2.4
Identities = 23/79 (29%), Positives = 36/79 (45%), Gaps = 2/79 (2%)
Frame = +2
Query: 47 VLSKFKDGLKLGNVRFASGNPYAETRKNLILTSETKV--IVQGFTGKQGTFHSQQALDYG 220
V FKD +KL N+R A Y+E ++L+ + +V + +G G + L
Sbjct: 280 VFEPFKDVVKLMNLREALPRQYSEHDQSLMSKNLKQVMNMAKGLKSSGGDIKRLENLRSN 339
Query: 221 TKVVGGVSPKKAGTEHLGK 277
TK + V K G LG+
Sbjct: 340 TKELEMVDLKNIGDPWLGR 358
>U37429-10|AAN63413.2| 100|Caenorhabditis elegans Hypothetical
protein F09E5.16 protein.
Length = 100
Score = 29.1 bits (62), Expect = 3.2
Identities = 15/31 (48%), Positives = 18/31 (58%), Gaps = 1/31 (3%)
Frame = -1
Query: 358 SSRGRYINNRGSCSCACLCLFD-CTKHRLTK 269
SSRG + R + S AC CL CT H +TK
Sbjct: 70 SSRGSVMRRRSAGSYACPCLHKVCTYHCMTK 100
>Z81117-4|CAB03319.1| 249|Caenorhabditis elegans Hypothetical
protein T06E6.10 protein.
Length = 249
Score = 27.9 bits (59), Expect = 7.4
Identities = 11/26 (42%), Positives = 12/26 (46%)
Frame = +1
Query: 397 PHCVHYRRCATT*YGASKTCPLETKQ 474
P C+H C TT K C L T Q
Sbjct: 133 PTCIHVNACTTTKCSPGKKCALHTVQ 158
>U80442-3|AAB37665.1| 333|Caenorhabditis elegans Hypothetical
protein T20F5.4 protein.
Length = 333
Score = 27.5 bits (58), Expect = 9.8
Identities = 16/30 (53%), Positives = 20/30 (66%), Gaps = 1/30 (3%)
Frame = +2
Query: 419 GVPQHDMVRVKHALLRQN-KSRLVGPNCPG 505
G+ + DM+R KH LL QN +SRL P PG
Sbjct: 19 GMQELDMLRAKHTLLIQNLRSRL--PIIPG 46
>U10438-12|ABB88244.1| 325|Caenorhabditis elegans Hypothetical
protein B0280.1b protein.
Length = 325
Score = 27.5 bits (58), Expect = 9.8
Identities = 21/75 (28%), Positives = 35/75 (46%), Gaps = 3/75 (4%)
Frame = -1
Query: 226 FSTIVKGLLAVEGTL--LSSETLNNHFCFTCKDQIFSGFSIRVAGCKSYIAEF*S-IFEL 56
+S V LA+ G L + S+ + F + C+D GF+ R C S++ IF L
Sbjct: 247 YSWWVLASLAILGRLNFIDSDAMKK-FIYACQDDETGGFADRPGDCVSFLNNIQKFIFVL 305
Query: 55 RKNPDWHSHCRIIEC 11
+ N + ++ EC
Sbjct: 306 QSNNVLATTKQLFEC 320
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,562,822
Number of Sequences: 27780
Number of extensions: 361774
Number of successful extensions: 934
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 883
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 934
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1613473434
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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