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Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0039
         (751 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC087079-9|AAK27865.1|  275|Caenorhabditis elegans Mitochondrial...   297   4e-81
U28940-7|AAA68353.2|  294|Caenorhabditis elegans Mitochondrial p...   202   2e-52
U29378-3|AAA68723.2|  330|Caenorhabditis elegans Stomatin protei...    42   5e-04
U29378-2|ABS19471.1|  325|Caenorhabditis elegans Stomatin protei...    42   5e-04
Z81072-4|CAB03018.2|  327|Caenorhabditis elegans Hypothetical pr...    36   0.031
AC006638-4|AAP82654.1|  312|Caenorhabditis elegans Stomatin prot...    36   0.031
AC006638-3|AAK85483.1|  367|Caenorhabditis elegans Stomatin prot...    36   0.031
U28943-16|AAK68291.1| 1001|Caenorhabditis elegans Clc-type  chlo...    31   1.2  
AF319614-1|AAG49524.1| 1001|Caenorhabditis elegans CLC-type chlo...    31   1.2  
AF039052-11|AAF98632.1|  583|Caenorhabditis elegans Hypothetical...    29   3.5  
Z67879-2|CAA91788.2|  156|Caenorhabditis elegans Hypothetical pr...    29   4.7  
AC006638-5|AAP82655.1|  175|Caenorhabditis elegans Stomatin prot...    29   4.7  
Z69902-6|CAD89723.1|  684|Caenorhabditis elegans Hypothetical pr...    28   6.2  
Z69902-5|CAA93762.1|  725|Caenorhabditis elegans Hypothetical pr...    28   6.2  
AL132895-2|CAC14404.1|  613|Caenorhabditis elegans Hypothetical ...    28   6.2  
U53344-3|AAA96224.1|  702|Caenorhabditis elegans Hypothetical pr...    28   8.1  
AL132943-1|CAC14390.1| 1042|Caenorhabditis elegans Hypothetical ...    28   8.1  
AF036700-2|AAB88365.1|  550|Caenorhabditis elegans Hypothetical ...    28   8.1  

>AC087079-9|AAK27865.1|  275|Caenorhabditis elegans Mitochondrial
           prohibitin complexprotein 1 protein.
          Length = 275

 Score =  297 bits (730), Expect = 4e-81
 Identities = 148/216 (68%), Positives = 168/216 (77%)
 Frame = +1

Query: 28  AAQLFNRIXXXXXXXXXXXXXXNSALYNVDGGHRAVIFDRFAGVKQLVVGEGTHFFIPWV 207
           A +L  R+               +ALYNVDGG RAVIFDRF+GVK  VVGEGTHF IPWV
Sbjct: 5   AQKLLGRLGTVGVGLSIAGGIAQTALYNVDGGQRAVIFDRFSGVKNEVVGEGTHFLIPWV 64

Query: 208 QRPIIFDIRSRPRNVPTITGSKDLQNVNITLRILFXPVPDQLPRIYTILGIDYDERVLPS 387
           Q+PIIFDIRS PR V TITGSKDLQNVNITLRIL  P PD+LP IY  +G+DY ERVLPS
Sbjct: 65  QKPIIFDIRSTPRAVTTITGSKDLQNVNITLRILHRPSPDRLPNIYLNIGLDYAERVLPS 124

Query: 388 ITSEVLKAVVAQFDAGELITQREIVSQKVNDSLTERAAQFGLILDDISITHLTFGKEFTQ 567
           IT+EVLKAVVAQFDA E+ITQRE+VSQ+ + +L ERAAQFGL+LDDI+ITHL FG+EFT+
Sbjct: 125 ITNEVLKAVVAQFDAHEMITQREVVSQRASVALRERAAQFGLLLDDIAITHLNFGREFTE 184

Query: 568 AVELKQVAQQEAEKARFLXEKAEHQKKXXXXXXXGD 675
           AVE+KQVAQQEAEKAR+L EKAE  K        GD
Sbjct: 185 AVEMKQVAQQEAEKARYLVEKAEQMKIAAVTTAEGD 220


>U28940-7|AAA68353.2|  294|Caenorhabditis elegans Mitochondrial
           prohibitin complexprotein 2 protein.
          Length = 294

 Score =  202 bits (494), Expect = 2e-52
 Identities = 98/192 (51%), Positives = 134/192 (69%)
 Frame = +1

Query: 100 ALYNVDGGHRAVIFDRFAGVKQLVVGEGTHFFIPWVQRPIIFDIRSRPRNVPTITGSKDL 279
           +++ V+ GHRA++F+R  G+   +  EG HF IPW Q PII+DIR+RP  + + TGSKDL
Sbjct: 39  SMFTVEAGHRAIMFNRIGGLSTDLYKEGLHFRIPWFQYPIIYDIRARPNQIRSPTGSKDL 98

Query: 280 QNVNITLRILFXPVPDQLPRIYTILGIDYDERVLPSITSEVLKAVVAQFDAGELITQREI 459
           Q VNI LR+L  P P+ L  IY  LG +++ERVLPSI +EVLK VVA+F+A +LITQR+ 
Sbjct: 99  QMVNIGLRVLSRPNPEHLVHIYRTLGQNWEERVLPSICNEVLKGVVAKFNASQLITQRQQ 158

Query: 460 VSQKVNDSLTERAAQFGLILDDISITHLTFGKEFTQAVELKQVAQQEAEKARFLXEKAEH 639
           VS  V  +L ERA  F +ILDD+S+T L F  +++ AVE KQVA QEA++A F  E+A+ 
Sbjct: 159 VSMLVRKTLIERALDFNIILDDVSLTELAFSPQYSAAVEAKQVAAQEAQRATFYVERAKQ 218

Query: 640 QKKXXXXXXXGD 675
           QK+       G+
Sbjct: 219 QKQEKIVQAEGE 230


>U29378-3|AAA68723.2|  330|Caenorhabditis elegans Stomatin protein
           1, isoform a protein.
          Length = 330

 Score = 41.9 bits (94), Expect = 5e-04
 Identities = 35/160 (21%), Positives = 73/160 (45%), Gaps = 1/160 (0%)
 Frame = +1

Query: 127 RAVIFDRFAGVKQLVVGEGTHFFIPWVQRPIIFDIRSRPRNVPT-ITGSKDLQNVNITLR 303
           RAV+F R   +   V G G  F IP +   +  D+R    NVP+    S+D   V++   
Sbjct: 72  RAVVF-RLGRLVPDVKGPGIFFIIPCIDTFLNIDLRVASYNVPSQEILSRDSVTVSVD-A 129

Query: 304 ILFXPVPDQLPRIYTILGIDYDERVLPSITSEVLKAVVAQFDAGELITQREIVSQKVNDS 483
           +++  V D    I +++G+         +    L+ ++      E+++ RE +S  +  S
Sbjct: 130 VVYFKVFDP---ITSVVGVGNATDSTKLLAQTTLRTILGTHTLSEILSDREKISADMKIS 186

Query: 484 LTERAAQFGLILDDISITHLTFGKEFTQAVELKQVAQQEA 603
           L E    +G+ ++ + +  +    +  +A+  +  A ++A
Sbjct: 187 LDEATEPWGIKVERVELRDVRLPSQMQRAMAAEAEATRDA 226


>U29378-2|ABS19471.1|  325|Caenorhabditis elegans Stomatin protein
           1, isoform b protein.
          Length = 325

 Score = 41.9 bits (94), Expect = 5e-04
 Identities = 35/160 (21%), Positives = 73/160 (45%), Gaps = 1/160 (0%)
 Frame = +1

Query: 127 RAVIFDRFAGVKQLVVGEGTHFFIPWVQRPIIFDIRSRPRNVPT-ITGSKDLQNVNITLR 303
           RAV+F R   +   V G G  F IP +   +  D+R    NVP+    S+D   V++   
Sbjct: 72  RAVVF-RLGRLVPDVKGPGIFFIIPCIDTFLNIDLRVASYNVPSQEILSRDSVTVSVD-A 129

Query: 304 ILFXPVPDQLPRIYTILGIDYDERVLPSITSEVLKAVVAQFDAGELITQREIVSQKVNDS 483
           +++  V D    I +++G+         +    L+ ++      E+++ RE +S  +  S
Sbjct: 130 VVYFKVFDP---ITSVVGVGNATDSTKLLAQTTLRTILGTHTLSEILSDREKISADMKIS 186

Query: 484 LTERAAQFGLILDDISITHLTFGKEFTQAVELKQVAQQEA 603
           L E    +G+ ++ + +  +    +  +A+  +  A ++A
Sbjct: 187 LDEATEPWGIKVERVELRDVRLPSQMQRAMAAEAEATRDA 226


>Z81072-4|CAB03018.2|  327|Caenorhabditis elegans Hypothetical
           protein F30A10.5 protein.
          Length = 327

 Score = 35.9 bits (79), Expect = 0.031
 Identities = 24/150 (16%), Positives = 70/150 (46%), Gaps = 2/150 (1%)
 Frame = +1

Query: 169 VVGEGTHFFIPWVQR-PIIFDIRSRPRNVPTITGSKDLQNVNITLR-ILFXPVPDQLPRI 342
           ++  G +F +P + +   + ++R     +P   G+  + NV + L  +L+  V D     
Sbjct: 58  ILEPGLNFLLPIIDKIKFVQNLREIAIEIPE-QGAITIDNVQLRLDGVLYLRVFDPYKAC 116

Query: 343 YTILGIDYDERVLPSITSEVLKAVVAQFDAGELITQREIVSQKVNDSLTERAAQFGLILD 522
               G+D  E  +  +    +++ V + +   +  +RE++++ +  ++ + +A +G+   
Sbjct: 117 DASYGVDDPEFAVTQLAQTTMRSEVGKINLDTVFKERELLNENIVFAINKASAPWGIQCM 176

Query: 523 DISITHLTFGKEFTQAVELKQVAQQEAEKA 612
              I  +    +  +A++++  A+++   A
Sbjct: 177 RYEIRDMQMPSKIQEAMQMQVEAERKKRAA 206


>AC006638-4|AAP82654.1|  312|Caenorhabditis elegans Stomatin protein
           5, isoform b protein.
          Length = 312

 Score = 35.9 bits (79), Expect = 0.031
 Identities = 34/163 (20%), Positives = 71/163 (43%), Gaps = 1/163 (0%)
 Frame = +1

Query: 127 RAVIFDRFAGVKQLVVGEGTHFFIPWVQRPIIFDIRSRPRNV-PTITGSKDLQNVNITLR 303
           RAVIF     +K    G G  F +P +    I D+R    +V P    S+D   V++   
Sbjct: 142 RAVIFRLGRLIKGGTKGPGLFFVLPCIDTMKIVDLRVLSFDVPPQEILSRDSVTVSVE-A 200

Query: 304 ILFXPVPDQLPRIYTILGIDYDERVLPSITSEVLKAVVAQFDAGELITQREIVSQKVNDS 483
           +++  V + +  +  +    +  R+L   T   L+ V+      E++++R+ ++      
Sbjct: 201 VIYFRVSNPVISVTNVNDAQFSTRLLAQTT---LRNVLGTKTLSEMLSERDAIASISEKV 257

Query: 484 LTERAAQFGLILDDISITHLTFGKEFTQAVELKQVAQQEAEKA 612
           L E    +G+ ++ + I  +    +  +++  K  A + A  A
Sbjct: 258 LDEGTDPWGVKVERVEIKDIRLPHQLMRSMAAKAEAVRRARAA 300


>AC006638-3|AAK85483.1|  367|Caenorhabditis elegans Stomatin protein
           5, isoform a protein.
          Length = 367

 Score = 35.9 bits (79), Expect = 0.031
 Identities = 34/163 (20%), Positives = 71/163 (43%), Gaps = 1/163 (0%)
 Frame = +1

Query: 127 RAVIFDRFAGVKQLVVGEGTHFFIPWVQRPIIFDIRSRPRNV-PTITGSKDLQNVNITLR 303
           RAVIF     +K    G G  F +P +    I D+R    +V P    S+D   V++   
Sbjct: 142 RAVIFRLGRLIKGGTKGPGLFFVLPCIDTMKIVDLRVLSFDVPPQEILSRDSVTVSVE-A 200

Query: 304 ILFXPVPDQLPRIYTILGIDYDERVLPSITSEVLKAVVAQFDAGELITQREIVSQKVNDS 483
           +++  V + +  +  +    +  R+L   T   L+ V+      E++++R+ ++      
Sbjct: 201 VIYFRVSNPVISVTNVNDAQFSTRLLAQTT---LRNVLGTKTLSEMLSERDAIASISEKV 257

Query: 484 LTERAAQFGLILDDISITHLTFGKEFTQAVELKQVAQQEAEKA 612
           L E    +G+ ++ + I  +    +  +++  K  A + A  A
Sbjct: 258 LDEGTDPWGVKVERVEIKDIRLPHQLMRSMAAKAEAVRRARAA 300


>U28943-16|AAK68291.1| 1001|Caenorhabditis elegans Clc-type
           chloride channel protein3, isoform a protein.
          Length = 1001

 Score = 30.7 bits (66), Expect = 1.2
 Identities = 29/90 (32%), Positives = 44/90 (48%), Gaps = 4/90 (4%)
 Frame = +1

Query: 301 RILFXPVPDQLPRIY---TILGIDYDERVLPSITSEVLKAVVAQFDAGELIT-QREIVSQ 468
           R L  PV    P++    T+ G+  +E     +T E  +A+   FDA  L T +RE+  +
Sbjct: 668 RFLIVPVAKNGPQVAKNETLTGLS-EENARKILTVEEKQAL---FDAASLATPKREMSGK 723

Query: 469 KVNDSLTERAAQFGLILDDISITHLTFGKE 558
            +N    E     G I    SITHL+FG++
Sbjct: 724 TINPVHIESHHTIGDIFR--SITHLSFGRQ 751


>AF319614-1|AAG49524.1| 1001|Caenorhabditis elegans CLC-type
           chloride channel CLH-3b protein.
          Length = 1001

 Score = 30.7 bits (66), Expect = 1.2
 Identities = 29/90 (32%), Positives = 44/90 (48%), Gaps = 4/90 (4%)
 Frame = +1

Query: 301 RILFXPVPDQLPRIY---TILGIDYDERVLPSITSEVLKAVVAQFDAGELIT-QREIVSQ 468
           R L  PV    P++    T+ G+  +E     +T E  +A+   FDA  L T +RE+  +
Sbjct: 668 RFLIVPVAKNGPQVAKNETLTGLS-EENARKILTVEEKQAL---FDAASLATPKREMSGK 723

Query: 469 KVNDSLTERAAQFGLILDDISITHLTFGKE 558
            +N    E     G I    SITHL+FG++
Sbjct: 724 TINPVHIESHHTIGDIFR--SITHLSFGRQ 751


>AF039052-11|AAF98632.1|  583|Caenorhabditis elegans Hypothetical
           protein T22D1.11 protein.
          Length = 583

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 9/23 (39%), Positives = 16/23 (69%)
 Frame = +1

Query: 199 PWVQRPIIFDIRSRPRNVPTITG 267
           P +Q  ++ D   +P+N+PT+TG
Sbjct: 315 PLIQNVLVQDFYEKPKNIPTLTG 337


>Z67879-2|CAA91788.2|  156|Caenorhabditis elegans Hypothetical
           protein C05E7.3 protein.
          Length = 156

 Score = 28.7 bits (61), Expect = 4.7
 Identities = 16/50 (32%), Positives = 24/50 (48%)
 Frame = +1

Query: 112 VDGGHRAVIFDRFAGVKQLVVGEGTHFFIPWVQRPIIFDIRSRPRNVPTI 261
           + GG     FDRF   K+ + GE     I W +R     +R+  R++P I
Sbjct: 31  IGGGDDMAHFDRFITHKRAINGELRRSSILWGKRAHASGLRNFERDIPLI 80


>AC006638-5|AAP82655.1|  175|Caenorhabditis elegans Stomatin protein
           5, isoform c protein.
          Length = 175

 Score = 28.7 bits (61), Expect = 4.7
 Identities = 26/114 (22%), Positives = 52/114 (45%), Gaps = 1/114 (0%)
 Frame = +1

Query: 127 RAVIFDRFAGVKQLVVGEGTHFFIPWVQRPIIFDIRSRPRNV-PTITGSKDLQNVNITLR 303
           RAVIF     +K    G G  F +P +    I D+R    +V P    S+D   V++   
Sbjct: 58  RAVIFRLGRLIKGGTKGPGLFFVLPCIDTMKIVDLRVLSFDVPPQEILSRDSVTVSVE-A 116

Query: 304 ILFXPVPDQLPRIYTILGIDYDERVLPSITSEVLKAVVAQFDAGELITQREIVS 465
           +++  V + +  +  +    +  R+L   T   L+ V+      E++++R+ ++
Sbjct: 117 VIYFRVSNPVISVTNVNDAQFSTRLLAQTT---LRNVLGTKTLSEMLSERDAIA 167


>Z69902-6|CAD89723.1|  684|Caenorhabditis elegans Hypothetical
           protein C47D12.6b protein.
          Length = 684

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 19/73 (26%), Positives = 34/73 (46%)
 Frame = +1

Query: 358 IDYDERVLPSITSEVLKAVVAQFDAGELITQREIVSQKVNDSLTERAAQFGLILDDISIT 537
           I+Y+E    ++  +V KA +AQF+   +I  +E  +  VN    + A +  + LD +   
Sbjct: 606 IEYEENCGDTMNKQVRKAQLAQFNFILVIGAKEKENGTVNVRTRDNAVRGEVALDKLISK 665

Query: 538 HLTFGKEFTQAVE 576
              F  E+    E
Sbjct: 666 FRRFADEYVADTE 678


>Z69902-5|CAA93762.1|  725|Caenorhabditis elegans Hypothetical
           protein C47D12.6a protein.
          Length = 725

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 19/73 (26%), Positives = 34/73 (46%)
 Frame = +1

Query: 358 IDYDERVLPSITSEVLKAVVAQFDAGELITQREIVSQKVNDSLTERAAQFGLILDDISIT 537
           I+Y+E    ++  +V KA +AQF+   +I  +E  +  VN    + A +  + LD +   
Sbjct: 647 IEYEENCGDTMNKQVRKAQLAQFNFILVIGAKEKENGTVNVRTRDNAVRGEVALDKLISK 706

Query: 538 HLTFGKEFTQAVE 576
              F  E+    E
Sbjct: 707 FRRFADEYVADTE 719


>AL132895-2|CAC14404.1|  613|Caenorhabditis elegans Hypothetical
           protein Y59A8A.2 protein.
          Length = 613

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 14/43 (32%), Positives = 26/43 (60%), Gaps = 1/43 (2%)
 Frame = +1

Query: 406 KAVVAQFDAGELITQREIVS-QKVNDSLTERAAQFGLILDDIS 531
           K +V +F A E + ++++ S +K++  LTE     GL+L D +
Sbjct: 465 KHLVERFSANEELIEQKLTSIEKLHQLLTELGGDSGLLLSDFN 507


>U53344-3|AAA96224.1|  702|Caenorhabditis elegans Hypothetical
           protein T07H6.4 protein.
          Length = 702

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 11/29 (37%), Positives = 18/29 (62%), Gaps = 1/29 (3%)
 Frame = -3

Query: 215 GLWTQGMKKCVPSPTTSCLTPANR-SKIT 132
           G+W+  +  C+P   T C  P++R SK+T
Sbjct: 366 GVWSSPIPYCIPIQATDCPFPSSRPSKLT 394


>AL132943-1|CAC14390.1| 1042|Caenorhabditis elegans Hypothetical
            protein Y116F11B.3 protein.
          Length = 1042

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 19/55 (34%), Positives = 27/55 (49%)
 Frame = -3

Query: 260  IVGTFLGRDLMSNIIGLWTQGMKKCVPSPTTSCLTPANRSKITAL*PPSTLYNAE 96
            + G  + RDL+   IG+W  G    V   TT+  T +N +       PSTLY+ E
Sbjct: 970  VPGLKVARDLVDQNIGVWLGGQ---VNITTTTATTTSNSTSY-----PSTLYSLE 1016


>AF036700-2|AAB88365.1|  550|Caenorhabditis elegans Hypothetical
           protein M04G7.2 protein.
          Length = 550

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 13/29 (44%), Positives = 18/29 (62%)
 Frame = -2

Query: 156 TSKSIEDNSSVTTVDIIQCRIDNTSNQCH 70
           TSKS+E+NSS TT D I    D  + + +
Sbjct: 219 TSKSLEENSSETTNDSISLADDEETREAY 247


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,238,374
Number of Sequences: 27780
Number of extensions: 267411
Number of successful extensions: 755
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 728
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 753
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1777507862
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

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