Silkworm BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0032
         (550 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z68270-5|CAA92570.1|  174|Caenorhabditis elegans Hypothetical pr...    32   0.31 
AF148954-1|AAD37411.1| 4280|Caenorhabditis elegans myotactin for...    29   2.2  
AF148953-1|AAD37410.1| 4450|Caenorhabditis elegans myotactin for...    29   2.2  
AF040648-5|AAK21413.1| 4450|Caenorhabditis elegans Lethal protei...    29   2.2  
AF040648-4|AAK21414.2| 4280|Caenorhabditis elegans Lethal protei...    29   2.2  

>Z68270-5|CAA92570.1|  174|Caenorhabditis elegans Hypothetical
           protein ZC410.5a protein.
          Length = 174

 Score = 31.9 bits (69), Expect = 0.31
 Identities = 21/75 (28%), Positives = 40/75 (53%), Gaps = 2/75 (2%)
 Frame = +2

Query: 95  QGIWYEISKFPNESEKNGK--CSSAEYKLEGDVVKVKNVHIIDGVKKYIEGTAKLTDDAN 268
           QG+  ++  F +   +N K   S+ + +LE +V +VK+  ++ G+K+ ++G   L +DA 
Sbjct: 36  QGVTSDVGNFFSNQFQNAKDLFSNDQNELEKNVQRVKD--LLTGLKEKVKGLEPLANDAQ 93

Query: 269 KAAKLTVTFKFGEIS 313
           K     V     E+S
Sbjct: 94  KETLKKVDGFLAEVS 108


>AF148954-1|AAD37411.1| 4280|Caenorhabditis elegans myotactin form A
            protein.
          Length = 4280

 Score = 29.1 bits (62), Expect = 2.2
 Identities = 16/46 (34%), Positives = 24/46 (52%), Gaps = 1/46 (2%)
 Frame = +2

Query: 44   GTCPELKPVNNFNLTAYQGIWYEIS-KFPNESEKNGKCSSAEYKLE 178
            G    L P  N NL +   +   +S + PN++  + KCS+  YKLE
Sbjct: 2421 GCAAPLSPPTNLNLASPSNVQVRVSWQAPNQN--SWKCSAIRYKLE 2464


>AF148953-1|AAD37410.1| 4450|Caenorhabditis elegans myotactin form B
            protein.
          Length = 4450

 Score = 29.1 bits (62), Expect = 2.2
 Identities = 16/46 (34%), Positives = 24/46 (52%), Gaps = 1/46 (2%)
 Frame = +2

Query: 44   GTCPELKPVNNFNLTAYQGIWYEIS-KFPNESEKNGKCSSAEYKLE 178
            G    L P  N NL +   +   +S + PN++  + KCS+  YKLE
Sbjct: 2421 GCAAPLSPPTNLNLASPSNVQVRVSWQAPNQN--SWKCSAIRYKLE 2464


>AF040648-5|AAK21413.1| 4450|Caenorhabditis elegans Lethal protein
            805, isoform b protein.
          Length = 4450

 Score = 29.1 bits (62), Expect = 2.2
 Identities = 16/46 (34%), Positives = 24/46 (52%), Gaps = 1/46 (2%)
 Frame = +2

Query: 44   GTCPELKPVNNFNLTAYQGIWYEIS-KFPNESEKNGKCSSAEYKLE 178
            G    L P  N NL +   +   +S + PN++  + KCS+  YKLE
Sbjct: 2421 GCAAPLSPPTNLNLASPSNVQVRVSWQAPNQN--SWKCSAIRYKLE 2464


>AF040648-4|AAK21414.2| 4280|Caenorhabditis elegans Lethal protein
            805, isoform a protein.
          Length = 4280

 Score = 29.1 bits (62), Expect = 2.2
 Identities = 16/46 (34%), Positives = 24/46 (52%), Gaps = 1/46 (2%)
 Frame = +2

Query: 44   GTCPELKPVNNFNLTAYQGIWYEIS-KFPNESEKNGKCSSAEYKLE 178
            G    L P  N NL +   +   +S + PN++  + KCS+  YKLE
Sbjct: 2421 GCAAPLSPPTNLNLASPSNVQVRVSWQAPNQN--SWKCSAIRYKLE 2464


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,455,911
Number of Sequences: 27780
Number of extensions: 161325
Number of successful extensions: 463
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 454
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 463
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1113119490
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)