Silkworm BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0026
         (337 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z73976-2|CAA98285.1|  360|Caenorhabditis elegans Hypothetical pr...    29   0.63 
AF098995-14|AAC67475.1|  327|Caenorhabditis elegans F-box b prot...    27   4.4  
Z81047-14|CAH04642.1|  357|Caenorhabditis elegans Hypothetical p...    26   5.8  
AF125964-1|AAD14753.1|  471|Caenorhabditis elegans Hypothetical ...    26   5.8  

>Z73976-2|CAA98285.1|  360|Caenorhabditis elegans Hypothetical
           protein T07C12.6 protein.
          Length = 360

 Score = 29.5 bits (63), Expect = 0.63
 Identities = 14/43 (32%), Positives = 25/43 (58%)
 Frame = -1

Query: 280 YFILYNCHHLCIKLYLINKISIAIFNLVILLLKLFTKFEHLII 152
           YF  +  + +C+K+YL  KI +  +N +IL + +F  +   II
Sbjct: 40  YFFAFYINSVCLKVYL--KIQLFHYNFIILSIPMFGLWYEAII 80


>AF098995-14|AAC67475.1|  327|Caenorhabditis elegans F-box b protein
           protein 47 protein.
          Length = 327

 Score = 26.6 bits (56), Expect = 4.4
 Identities = 10/31 (32%), Positives = 20/31 (64%)
 Frame = -1

Query: 250 CIKLYLINKISIAIFNLVILLLKLFTKFEHL 158
           C+K   I  +SI   N + L+++L++ F+H+
Sbjct: 140 CLKNLKILNLSIGFTNKISLVVELYSAFQHI 170


>Z81047-14|CAH04642.1|  357|Caenorhabditis elegans Hypothetical
           protein C41G6.16 protein.
          Length = 357

 Score = 26.2 bits (55), Expect = 5.8
 Identities = 16/51 (31%), Positives = 26/51 (50%), Gaps = 6/51 (11%)
 Frame = -1

Query: 280 YFILYNCHH---LCIKLYLIN---KISIAIFNLVILLLKLFTKFEHLIILR 146
           Y+    CHH     I L  +N   + +I   NL+I++L + +   H +ILR
Sbjct: 20  YYSFLLCHHSKDYAIHLNFLNFDVEYAIKYPNLIIVMLGMLSNILHFLILR 70


>AF125964-1|AAD14753.1|  471|Caenorhabditis elegans Hypothetical
           protein W03G1.5 protein.
          Length = 471

 Score = 26.2 bits (55), Expect = 5.8
 Identities = 14/33 (42%), Positives = 19/33 (57%), Gaps = 3/33 (9%)
 Frame = +2

Query: 38  DLSGVSID---KDKENSKVLISSGYSKTKHGRS 127
           DL G+  D   +D E+ +   SS +SK  HGRS
Sbjct: 101 DLKGLKKDLKSEDDEDDRRSSSSSFSKVSHGRS 133


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,121,492
Number of Sequences: 27780
Number of extensions: 69205
Number of successful extensions: 144
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 142
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 144
length of database: 12,740,198
effective HSP length: 72
effective length of database: 10,740,038
effective search space used: 418861482
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)