Silkworm BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0023
         (600 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z83218-4|CAB05690.2|  706|Caenorhabditis elegans Hypothetical pr...    27   7.7  
AF022983-1|AAB69946.2|  324|Caenorhabditis elegans Serpentine re...    27   7.7  

>Z83218-4|CAB05690.2|  706|Caenorhabditis elegans Hypothetical
           protein C31A11.7 protein.
          Length = 706

 Score = 27.5 bits (58), Expect = 7.7
 Identities = 11/20 (55%), Positives = 14/20 (70%)
 Frame = +1

Query: 67  KKSQLKS**VWIIYYLHHTL 126
           K SQ+KS   WII+Y+H  L
Sbjct: 339 KSSQIKSPLTWIIFYMHRYL 358


>AF022983-1|AAB69946.2|  324|Caenorhabditis elegans Serpentine
           receptor, class ab (class a-like) protein 16 protein.
          Length = 324

 Score = 27.5 bits (58), Expect = 7.7
 Identities = 20/61 (32%), Positives = 28/61 (45%), Gaps = 1/61 (1%)
 Frame = +3

Query: 330 IMARFIFGFNFGTLKFIVT*NK-NSQE*QETLFYNIEKNN*TKKSVLIFISCKVILYKIY 506
           I++ FI  F FG L  I T  +  S E   +  Y IE+N    + +  F  C  +   IY
Sbjct: 190 ILSNFIAFFQFGKLMRINTKIRVGSSENNLSQKYQIEENLNVVRILRAFTKCDFVFILIY 249

Query: 507 F 509
           F
Sbjct: 250 F 250


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,093,644
Number of Sequences: 27780
Number of extensions: 218978
Number of successful extensions: 304
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 304
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 304
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1279376318
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)