Silkworm BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0009
         (751 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF067222-1|AAC17017.2| 1464|Caenorhabditis elegans Hypothetical ...    36   0.023
U42841-12|AAC48169.2| 1030|Caenorhabditis elegans Gex interactin...    31   1.2  
AF067616-11|AAC19194.2|  627|Caenorhabditis elegans Collagen pro...    31   1.2  
Z75539-1|CAA99843.1|  672|Caenorhabditis elegans Hypothetical pr...    30   2.0  
Z69903-7|CAA93776.1| 1607|Caenorhabditis elegans Hypothetical pr...    29   2.7  
Z69660-1|CAA93489.1| 1607|Caenorhabditis elegans Hypothetical pr...    29   2.7  
U88308-9|AAB42325.1|  933|Caenorhabditis elegans Patched related...    29   3.5  
AC025724-1|AAG23375.2| 4177|Caenorhabditis elegans Enhancer of e...    29   4.7  
AL132948-1|CAC51077.1|  735|Caenorhabditis elegans Hypothetical ...    28   6.2  
AF106579-5|AAC78198.1|  174|Caenorhabditis elegans Hypothetical ...    28   6.2  
U53154-11|AAC25848.1|  390|Caenorhabditis elegans Hypothetical p...    28   8.1  
AC006714-6|AAN84810.2|  339|Caenorhabditis elegans Hypothetical ...    28   8.1  

>AF067222-1|AAC17017.2| 1464|Caenorhabditis elegans Hypothetical
            protein H11E01.3 protein.
          Length = 1464

 Score = 36.3 bits (80), Expect = 0.023
 Identities = 30/103 (29%), Positives = 45/103 (43%), Gaps = 9/103 (8%)
 Frame = +3

Query: 6    SSYIHASPVVQHFSPVQHAPVVHHAAI--PIAVEHSDHVE--DHAPA--KYEF--SYSVE 161
            S+  H+S   +H    + +PV +  ++  P A EH +H E   H+PA  + EF  S SV 
Sbjct: 703  SNQFHSS---EHIEEARQSPVTNQESVHSPHASEHFEHREVVPHSPAASQEEFGRSPSVH 759

Query: 162  DPHTGDHKSQH-ETRDGDVVKGEYSLLQPDGSIRKVEYTADHH 287
             PH  +H   H E +   V   E +   P           +HH
Sbjct: 760  SPHVSEHFEHHEEAQHSPVASQEEAARSPSVHSSHASEHFEHH 802


>U42841-12|AAC48169.2| 1030|Caenorhabditis elegans Gex interacting
           protein protein16, isoform d protein.
          Length = 1030

 Score = 30.7 bits (66), Expect = 1.2
 Identities = 13/43 (30%), Positives = 19/43 (44%)
 Frame = +3

Query: 6   SSYIHASPVVQHFSPVQHAPVVHHAAIPIAVEHSDHVEDHAPA 134
           SSYIH+S  +QH     H P      +   ++H  H     P+
Sbjct: 90  SSYIHSSQQIQHPPQQHHPPPPSPPPVAETIQHQPHPSQQQPS 132


>AF067616-11|AAC19194.2|  627|Caenorhabditis elegans Collagen
           protein 99 protein.
          Length = 627

 Score = 30.7 bits (66), Expect = 1.2
 Identities = 16/41 (39%), Positives = 23/41 (56%), Gaps = 2/41 (4%)
 Frame = -2

Query: 543 GQRGRSELGERSEPRERSELGERSEP--QGLNELQGQSEAL 427
           G+ GR+ +G +  P E+ E GER EP  +GL    G +  L
Sbjct: 285 GEPGRTIIGPQGPPGEKGERGERGEPGDRGLPGAAGAANLL 325


>Z75539-1|CAA99843.1|  672|Caenorhabditis elegans Hypothetical
           protein F28C1.1 protein.
          Length = 672

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 19/50 (38%), Positives = 25/50 (50%), Gaps = 2/50 (4%)
 Frame = -2

Query: 612 QRVRRAREELSVQEEWRGTETLCGQRGRSELG--ERSEPRERSELGERSE 469
           Q +++ R+EL+ +EE R  E    QR R EL   E  E RER       E
Sbjct: 616 QALKKTRQELAKEEEDRKKEAEVAQRVRDELRYIETQERRERERAKRNPE 665


>Z69903-7|CAA93776.1| 1607|Caenorhabditis elegans Hypothetical
           protein F39B1.1 protein.
          Length = 1607

 Score = 29.5 bits (63), Expect = 2.7
 Identities = 15/25 (60%), Positives = 16/25 (64%), Gaps = 1/25 (4%)
 Frame = +3

Query: 429 VLHSAPV-VHSTPVVHSAPLIHSAP 500
           V  S PV +H TP V S PL HSAP
Sbjct: 154 VQQSPPVPIHPTPPVSSTPLRHSAP 178


>Z69660-1|CAA93489.1| 1607|Caenorhabditis elegans Hypothetical
           protein F39B1.1 protein.
          Length = 1607

 Score = 29.5 bits (63), Expect = 2.7
 Identities = 15/25 (60%), Positives = 16/25 (64%), Gaps = 1/25 (4%)
 Frame = +3

Query: 429 VLHSAPV-VHSTPVVHSAPLIHSAP 500
           V  S PV +H TP V S PL HSAP
Sbjct: 154 VQQSPPVPIHPTPPVSSTPLRHSAP 178


>U88308-9|AAB42325.1|  933|Caenorhabditis elegans Patched related
           family protein 2 protein.
          Length = 933

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 14/31 (45%), Positives = 20/31 (64%)
 Frame = -3

Query: 194 VLGLVIAGVGILDGI*ELILRGSMIFDMIGV 102
           +LG+V AG+ IL G+  L L G    D++GV
Sbjct: 304 ILGVVSAGIAILTGVGFLSLMGMPYNDIVGV 334


>AC025724-1|AAG23375.2| 4177|Caenorhabditis elegans Enhancer of efl-1
            mutant phenotypeprotein 1 protein.
          Length = 4177

 Score = 28.7 bits (61), Expect = 4.7
 Identities = 18/57 (31%), Positives = 25/57 (43%), Gaps = 1/57 (1%)
 Frame = -2

Query: 573  EEWRGTETLCGQRGRSELGERSEPRERSELGERSE-PQGLNELQGQSEALEQSESQG 406
            + WRG      QRG  ++ E  E  E  E  ERS+ P   +E  G  E  + +   G
Sbjct: 2368 DHWRGNSV---QRGAGQVAEEEEGSETYEERERSDSPSESSEHAGDEEVRDDAVETG 2421


>AL132948-1|CAC51077.1|  735|Caenorhabditis elegans Hypothetical
           protein Y39B6A.1 protein.
          Length = 735

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 17/60 (28%), Positives = 19/60 (31%), Gaps = 1/60 (1%)
 Frame = +3

Query: 18  HASPVVQ-HFSPVQHAPVVHHAAIPIAVEHSDHVEDHAPAKYEFSYSVEDPHTGDHKSQH 194
           H SP    H     HAP  H         H  H E H    +   +     H G H S H
Sbjct: 497 HHSPAHHGHHGEHHHAPAHHGHHGEHGTHHGHHGEHHHAPAHHGHHGEHGTHHGHHGSHH 556


>AF106579-5|AAC78198.1|  174|Caenorhabditis elegans Hypothetical
           protein F54E2.2 protein.
          Length = 174

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 10/18 (55%), Positives = 11/18 (61%)
 Frame = -1

Query: 79  AWCTTGACCTGLKCWTTG 26
           +WCTT   C G KC  TG
Sbjct: 150 SWCTTDQDCKGKKCCPTG 167


>U53154-11|AAC25848.1|  390|Caenorhabditis elegans Hypothetical
           protein C33G8.2 protein.
          Length = 390

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 17/47 (36%), Positives = 22/47 (46%)
 Frame = -2

Query: 216 RHHHHGFRVGTCDRRCGDPRRNMRTHTSREHDLRHDRSVRRQLESQR 76
           RH HHG R G   R  G  RRN     S   D   D+  R+Q+  ++
Sbjct: 85  RHGHHG-RHGM-GRHGGHGRRNKSGSDSDSSDSSEDKKKRKQMRDKK 129


>AC006714-6|AAN84810.2|  339|Caenorhabditis elegans Hypothetical
           protein Y119D3B.12a protein.
          Length = 339

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 20/62 (32%), Positives = 24/62 (38%), Gaps = 2/62 (3%)
 Frame = -2

Query: 240 GVESIRLSRHHHHGFRVGTC--DRRCGDPRRNMRTHTSREHDLRHDRSVRRQLESQRGAR 67
           G +  R +  HHH  R      D R  D R   R H   +   R DR   R   S+R  R
Sbjct: 271 GADRKRSTEQHHHSHRSSRDHRDHRHRDHRGEHREHREHKEHRRDDR--HRSERSERSER 328

Query: 66  LE 61
            E
Sbjct: 329 SE 330


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,218,884
Number of Sequences: 27780
Number of extensions: 260974
Number of successful extensions: 1107
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 962
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1080
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1777507862
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)