Silkworm BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--0109
         (653 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF039044-4|AAG24122.3|  328|Caenorhabditis elegans Serpentine re...    29   2.2  
Z79754-6|CAB02095.1|  368|Caenorhabditis elegans Hypothetical pr...    28   5.0  
Z54218-4|CAA90958.1| 1367|Caenorhabditis elegans Hypothetical pr...    28   6.7  
Z49910-9|CAA90125.1| 1367|Caenorhabditis elegans Hypothetical pr...    28   6.7  

>AF039044-4|AAG24122.3|  328|Caenorhabditis elegans Serpentine
           receptor, class t protein17 protein.
          Length = 328

 Score = 29.5 bits (63), Expect = 2.2
 Identities = 15/46 (32%), Positives = 25/46 (54%)
 Frame = +1

Query: 370 DRNLNTSFFDPAGGGDPILYQHLF*FFGHPEVYILILPGFGIISHI 507
           + N ++ F DP  G DP LY++    F +  V I  +  +G IS++
Sbjct: 187 NENYSSWFTDPGLGHDPALYKNSLIAFNNFAVAICTIVFYGYISYV 232


>Z79754-6|CAB02095.1|  368|Caenorhabditis elegans Hypothetical
           protein F25H2.7 protein.
          Length = 368

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 13/39 (33%), Positives = 22/39 (56%), Gaps = 1/39 (2%)
 Frame = +2

Query: 515 RKRK-KRNFWLFRNNLCYTSNWVIRIYXLSSSYIHWRYR 628
           +KRK K  F ++ + L Y S W +       +Y++WRY+
Sbjct: 293 KKRKDKLTFAMWHSPLIYDSPWNLTRCSKGVAYLNWRYK 331


>Z54218-4|CAA90958.1| 1367|Caenorhabditis elegans Hypothetical
           protein F44G4.8 protein.
          Length = 1367

 Score = 27.9 bits (59), Expect = 6.7
 Identities = 12/32 (37%), Positives = 21/32 (65%)
 Frame = -2

Query: 466 KLQDVQKIKINVDIKLGLLLQQDQKMMYLSFD 371
           KLQD+QK+K +VD+ +   L +D+  + +  D
Sbjct: 822 KLQDIQKVKQDVDVSIFEELGEDETCLEVRAD 853


>Z49910-9|CAA90125.1| 1367|Caenorhabditis elegans Hypothetical
           protein F44G4.8 protein.
          Length = 1367

 Score = 27.9 bits (59), Expect = 6.7
 Identities = 12/32 (37%), Positives = 21/32 (65%)
 Frame = -2

Query: 466 KLQDVQKIKINVDIKLGLLLQQDQKMMYLSFD 371
           KLQD+QK+K +VD+ +   L +D+  + +  D
Sbjct: 822 KLQDIQKVKQDVDVSIFEELGEDETCLEVRAD 853


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,922,442
Number of Sequences: 27780
Number of extensions: 228814
Number of successful extensions: 480
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 457
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 480
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1455289764
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)