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Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--0106
         (646 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81461-2|CAB03835.1|  135|Caenorhabditis elegans Hypothetical pr...    60   1e-09
U41549-2|AAA83282.1|  208|Caenorhabditis elegans Histone h1 like...    31   0.53 
AF012253-1|AAB66471.1|  208|Caenorhabditis elegans histone H1.3 ...    31   0.53 
Z81096-8|CAD54149.2|  922|Caenorhabditis elegans Hypothetical pr...    29   2.1  
Z81096-6|CAJ80827.1|  691|Caenorhabditis elegans Hypothetical pr...    29   2.1  
Z81096-5|CAD54150.1|  507|Caenorhabditis elegans Hypothetical pr...    29   2.1  
Z81096-4|CAB54264.2|  689|Caenorhabditis elegans Hypothetical pr...    29   2.1  
Z81096-3|CAB54265.2|  747|Caenorhabditis elegans Hypothetical pr...    29   2.1  
Z78065-11|CAD54155.2|  922|Caenorhabditis elegans Hypothetical p...    29   2.1  
Z78065-10|CAJ80826.1|  691|Caenorhabditis elegans Hypothetical p...    29   2.1  
Z78065-8|CAD54156.1|  507|Caenorhabditis elegans Hypothetical pr...    29   2.1  
Z78065-7|CAB54297.2|  689|Caenorhabditis elegans Hypothetical pr...    29   2.1  
Z78065-6|CAB54298.2|  747|Caenorhabditis elegans Hypothetical pr...    29   2.1  
Z78065-1|CAD54154.1|  547|Caenorhabditis elegans Hypothetical pr...    29   2.1  
Z98866-16|CAB11565.2| 1159|Caenorhabditis elegans Hypothetical p...    29   3.7  
Z72516-2|CAA96689.2|  513|Caenorhabditis elegans Hypothetical pr...    29   3.7  
AY551965-1|AAS65429.1| 2395|Caenorhabditis elegans Swi/Snf famil...    29   3.7  
AL132904-26|CAC35851.3| 2395|Caenorhabditis elegans Hypothetical...    29   3.7  
U00068-1|AAA50745.1|   85|Caenorhabditis elegans Hypothetical pr...    28   6.5  

>Z81461-2|CAB03835.1|  135|Caenorhabditis elegans Hypothetical
           protein C04F12.4 protein.
          Length = 135

 Score = 60.5 bits (140), Expect = 1e-09
 Identities = 35/86 (40%), Positives = 45/86 (52%)
 Frame = +2

Query: 38  FARYVEPGRVALVADGPLKGKLVSVVDVIDQTRALVDGPGSGVPRQQIRLNQLHLTKFRL 217
           F R V+ GRV  +A G  +GKL ++V+VID  R  +DGP S V R    L  L LTKF L
Sbjct: 3   FNRVVQIGRVVFIASGKDQGKLAAIVNVIDGNRVQIDGPSSDVTRTVRNLKDLQLTKFVL 62

Query: 218 KYAFTAPTRLVRKRGQMLNSMKNGQK 295
           K      T+ V+         +N QK
Sbjct: 63  KLRVGQRTKGVKAAFDAAKVTENFQK 88



 Score = 52.8 bits (121), Expect = 2e-07
 Identities = 29/85 (34%), Positives = 48/85 (56%)
 Frame = +1

Query: 184 LKPTPSHKIPPQIRVHSPYSSCEEAWTDAKLNEKWTESQWAQKLANKEKRAQMTDYDRFK 363
           LK     K   ++RV       + A+  AK+ E + ++QWA+K+A +  RA++TD++R+K
Sbjct: 52  LKDLQLTKFVLKLRVGQRTKGVKAAFDAAKVTENFQKTQWAKKIAQRAIRAKLTDFERYK 111

Query: 364 LTAARVKRNRARTAVFKSLKXKAER 438
           L  A+  RNR        LK KA++
Sbjct: 112 LMKAKQMRNRIVRVELAKLK-KAQK 135


>U41549-2|AAA83282.1|  208|Caenorhabditis elegans Histone h1 like
           protein 3 protein.
          Length = 208

 Score = 31.5 bits (68), Expect = 0.53
 Identities = 21/67 (31%), Positives = 33/67 (49%)
 Frame = +1

Query: 268 AKLNEKWTESQWAQKLANKEKRAQMTDYDRFKLTAARVKRNRARTAVFKSLKXKAERAGT 447
           A   EK  +   AQK A  EK+A+ T   + K TA +VK+ ++   + K    K  ++  
Sbjct: 127 AATGEKKAKKPVAQKAATGEKKAKKTTATKTKKTADKVKKVKSPKKIAKPTAKKVAKSP- 185

Query: 448 FGKKNIP 468
             KK+ P
Sbjct: 186 -AKKSAP 191


>AF012253-1|AAB66471.1|  208|Caenorhabditis elegans histone H1.3
           protein.
          Length = 208

 Score = 31.5 bits (68), Expect = 0.53
 Identities = 21/67 (31%), Positives = 33/67 (49%)
 Frame = +1

Query: 268 AKLNEKWTESQWAQKLANKEKRAQMTDYDRFKLTAARVKRNRARTAVFKSLKXKAERAGT 447
           A   EK  +   AQK A  EK+A+ T   + K TA +VK+ ++   + K    K  ++  
Sbjct: 127 AATGEKKAKKPVAQKAATGEKKAKKTTATKTKKTADKVKKVKSPKKIAKPTAKKVAKSP- 185

Query: 448 FGKKNIP 468
             KK+ P
Sbjct: 186 -AKKSAP 191


>Z81096-8|CAD54149.2|  922|Caenorhabditis elegans Hypothetical
           protein T09E8.1c protein.
          Length = 922

 Score = 29.5 bits (63), Expect = 2.1
 Identities = 21/85 (24%), Positives = 35/85 (41%)
 Frame = +1

Query: 187 KPTPSHKIPPQIRVHSPYSSCEEAWTDAKLNEKWTESQWAQKLANKEKRAQMTDYDRFKL 366
           K   SH  P Q R  S  SS     ++   +E+    + + +LANK+++    +    K 
Sbjct: 535 KEQSSHSTPSQSRHSSSKSSHFNGSSNLSTSEQLRLQEMSDELANKDRKVTSLESKLLKA 594

Query: 367 TAARVKRNRARTAVFKSLKXKAERA 441
                + N       K+L   +ERA
Sbjct: 595 YQRIERLNEEYDGKIKNLMYDSERA 619


>Z81096-6|CAJ80827.1|  691|Caenorhabditis elegans Hypothetical
           protein T09E8.1f protein.
          Length = 691

 Score = 29.5 bits (63), Expect = 2.1
 Identities = 21/85 (24%), Positives = 35/85 (41%)
 Frame = +1

Query: 187 KPTPSHKIPPQIRVHSPYSSCEEAWTDAKLNEKWTESQWAQKLANKEKRAQMTDYDRFKL 366
           K   SH  P Q R  S  SS     ++   +E+    + + +LANK+++    +    K 
Sbjct: 304 KEQSSHSTPSQSRHSSSKSSHFNGSSNLSTSEQLRLQEMSDELANKDRKVTSLESKLLKA 363

Query: 367 TAARVKRNRARTAVFKSLKXKAERA 441
                + N       K+L   +ERA
Sbjct: 364 YQRIERLNEEYDGKIKNLMYDSERA 388


>Z81096-5|CAD54150.1|  507|Caenorhabditis elegans Hypothetical
           protein T09E8.1e protein.
          Length = 507

 Score = 29.5 bits (63), Expect = 2.1
 Identities = 21/85 (24%), Positives = 35/85 (41%)
 Frame = +1

Query: 187 KPTPSHKIPPQIRVHSPYSSCEEAWTDAKLNEKWTESQWAQKLANKEKRAQMTDYDRFKL 366
           K   SH  P Q R  S  SS     ++   +E+    + + +LANK+++    +    K 
Sbjct: 120 KEQSSHSTPSQSRHSSSKSSHFNGSSNLSTSEQLRLQEMSDELANKDRKVTSLESKLLKA 179

Query: 367 TAARVKRNRARTAVFKSLKXKAERA 441
                + N       K+L   +ERA
Sbjct: 180 YQRIERLNEEYDGKIKNLMYDSERA 204


>Z81096-4|CAB54264.2|  689|Caenorhabditis elegans Hypothetical
           protein T09E8.1b protein.
          Length = 689

 Score = 29.5 bits (63), Expect = 2.1
 Identities = 21/85 (24%), Positives = 35/85 (41%)
 Frame = +1

Query: 187 KPTPSHKIPPQIRVHSPYSSCEEAWTDAKLNEKWTESQWAQKLANKEKRAQMTDYDRFKL 366
           K   SH  P Q R  S  SS     ++   +E+    + + +LANK+++    +    K 
Sbjct: 302 KEQSSHSTPSQSRHSSSKSSHFNGSSNLSTSEQLRLQEMSDELANKDRKVTSLESKLLKA 361

Query: 367 TAARVKRNRARTAVFKSLKXKAERA 441
                + N       K+L   +ERA
Sbjct: 362 YQRIERLNEEYDGKIKNLMYDSERA 386


>Z81096-3|CAB54265.2|  747|Caenorhabditis elegans Hypothetical
           protein T09E8.1a protein.
          Length = 747

 Score = 29.5 bits (63), Expect = 2.1
 Identities = 21/85 (24%), Positives = 35/85 (41%)
 Frame = +1

Query: 187 KPTPSHKIPPQIRVHSPYSSCEEAWTDAKLNEKWTESQWAQKLANKEKRAQMTDYDRFKL 366
           K   SH  P Q R  S  SS     ++   +E+    + + +LANK+++    +    K 
Sbjct: 360 KEQSSHSTPSQSRHSSSKSSHFNGSSNLSTSEQLRLQEMSDELANKDRKVTSLESKLLKA 419

Query: 367 TAARVKRNRARTAVFKSLKXKAERA 441
                + N       K+L   +ERA
Sbjct: 420 YQRIERLNEEYDGKIKNLMYDSERA 444


>Z78065-11|CAD54155.2|  922|Caenorhabditis elegans Hypothetical
           protein T09E8.1c protein.
          Length = 922

 Score = 29.5 bits (63), Expect = 2.1
 Identities = 21/85 (24%), Positives = 35/85 (41%)
 Frame = +1

Query: 187 KPTPSHKIPPQIRVHSPYSSCEEAWTDAKLNEKWTESQWAQKLANKEKRAQMTDYDRFKL 366
           K   SH  P Q R  S  SS     ++   +E+    + + +LANK+++    +    K 
Sbjct: 535 KEQSSHSTPSQSRHSSSKSSHFNGSSNLSTSEQLRLQEMSDELANKDRKVTSLESKLLKA 594

Query: 367 TAARVKRNRARTAVFKSLKXKAERA 441
                + N       K+L   +ERA
Sbjct: 595 YQRIERLNEEYDGKIKNLMYDSERA 619


>Z78065-10|CAJ80826.1|  691|Caenorhabditis elegans Hypothetical
           protein T09E8.1f protein.
          Length = 691

 Score = 29.5 bits (63), Expect = 2.1
 Identities = 21/85 (24%), Positives = 35/85 (41%)
 Frame = +1

Query: 187 KPTPSHKIPPQIRVHSPYSSCEEAWTDAKLNEKWTESQWAQKLANKEKRAQMTDYDRFKL 366
           K   SH  P Q R  S  SS     ++   +E+    + + +LANK+++    +    K 
Sbjct: 304 KEQSSHSTPSQSRHSSSKSSHFNGSSNLSTSEQLRLQEMSDELANKDRKVTSLESKLLKA 363

Query: 367 TAARVKRNRARTAVFKSLKXKAERA 441
                + N       K+L   +ERA
Sbjct: 364 YQRIERLNEEYDGKIKNLMYDSERA 388


>Z78065-8|CAD54156.1|  507|Caenorhabditis elegans Hypothetical
           protein T09E8.1e protein.
          Length = 507

 Score = 29.5 bits (63), Expect = 2.1
 Identities = 21/85 (24%), Positives = 35/85 (41%)
 Frame = +1

Query: 187 KPTPSHKIPPQIRVHSPYSSCEEAWTDAKLNEKWTESQWAQKLANKEKRAQMTDYDRFKL 366
           K   SH  P Q R  S  SS     ++   +E+    + + +LANK+++    +    K 
Sbjct: 120 KEQSSHSTPSQSRHSSSKSSHFNGSSNLSTSEQLRLQEMSDELANKDRKVTSLESKLLKA 179

Query: 367 TAARVKRNRARTAVFKSLKXKAERA 441
                + N       K+L   +ERA
Sbjct: 180 YQRIERLNEEYDGKIKNLMYDSERA 204


>Z78065-7|CAB54297.2|  689|Caenorhabditis elegans Hypothetical
           protein T09E8.1b protein.
          Length = 689

 Score = 29.5 bits (63), Expect = 2.1
 Identities = 21/85 (24%), Positives = 35/85 (41%)
 Frame = +1

Query: 187 KPTPSHKIPPQIRVHSPYSSCEEAWTDAKLNEKWTESQWAQKLANKEKRAQMTDYDRFKL 366
           K   SH  P Q R  S  SS     ++   +E+    + + +LANK+++    +    K 
Sbjct: 302 KEQSSHSTPSQSRHSSSKSSHFNGSSNLSTSEQLRLQEMSDELANKDRKVTSLESKLLKA 361

Query: 367 TAARVKRNRARTAVFKSLKXKAERA 441
                + N       K+L   +ERA
Sbjct: 362 YQRIERLNEEYDGKIKNLMYDSERA 386


>Z78065-6|CAB54298.2|  747|Caenorhabditis elegans Hypothetical
           protein T09E8.1a protein.
          Length = 747

 Score = 29.5 bits (63), Expect = 2.1
 Identities = 21/85 (24%), Positives = 35/85 (41%)
 Frame = +1

Query: 187 KPTPSHKIPPQIRVHSPYSSCEEAWTDAKLNEKWTESQWAQKLANKEKRAQMTDYDRFKL 366
           K   SH  P Q R  S  SS     ++   +E+    + + +LANK+++    +    K 
Sbjct: 360 KEQSSHSTPSQSRHSSSKSSHFNGSSNLSTSEQLRLQEMSDELANKDRKVTSLESKLLKA 419

Query: 367 TAARVKRNRARTAVFKSLKXKAERA 441
                + N       K+L   +ERA
Sbjct: 420 YQRIERLNEEYDGKIKNLMYDSERA 444


>Z78065-1|CAD54154.1|  547|Caenorhabditis elegans Hypothetical
           protein T09E8.1d protein.
          Length = 547

 Score = 29.5 bits (63), Expect = 2.1
 Identities = 21/85 (24%), Positives = 35/85 (41%)
 Frame = +1

Query: 187 KPTPSHKIPPQIRVHSPYSSCEEAWTDAKLNEKWTESQWAQKLANKEKRAQMTDYDRFKL 366
           K   SH  P Q R  S  SS     ++   +E+    + + +LANK+++    +    K 
Sbjct: 160 KEQSSHSTPSQSRHSSSKSSHFNGSSNLSTSEQLRLQEMSDELANKDRKVTSLESKLLKA 219

Query: 367 TAARVKRNRARTAVFKSLKXKAERA 441
                + N       K+L   +ERA
Sbjct: 220 YQRIERLNEEYDGKIKNLMYDSERA 244


>Z98866-16|CAB11565.2| 1159|Caenorhabditis elegans Hypothetical
           protein Y49E10.19 protein.
          Length = 1159

 Score = 28.7 bits (61), Expect = 3.7
 Identities = 12/30 (40%), Positives = 18/30 (60%)
 Frame = +1

Query: 292 ESQWAQKLANKEKRAQMTDYDRFKLTAARV 381
           E+QWA     ++ RA +T+YDR K    R+
Sbjct: 807 EAQWAMLRHVEKHRALLTEYDRLKRDGPRI 836


>Z72516-2|CAA96689.2|  513|Caenorhabditis elegans Hypothetical
           protein T25G3.3 protein.
          Length = 513

 Score = 28.7 bits (61), Expect = 3.7
 Identities = 21/75 (28%), Positives = 33/75 (44%)
 Frame = +3

Query: 231 QPLLVL*GSVDRC*TQ*KMDRKSMGPEVSEQREARTNDRLR*VQVNSCTS*EEPCQDCRI 410
           +P+L      D C    +   K +  +++ Q+E  TN  L+   V   T   + C DCR 
Sbjct: 85  KPMLTKVRLTDACFVWTEAHSKRIKVKITIQKEVFTNTILQQAVVVEFTVHSQLCDDCRR 144

Query: 411 QELEGEG*ACWXLRQ 455
            E +    AC  +RQ
Sbjct: 145 AEAKDFWRACVQVRQ 159


>AY551965-1|AAS65429.1| 2395|Caenorhabditis elegans Swi/Snf family
            ATPase protein.
          Length = 2395

 Score = 28.7 bits (61), Expect = 3.7
 Identities = 20/78 (25%), Positives = 34/78 (43%)
 Frame = +1

Query: 214  PQIRVHSPYSSCEEAWTDAKLNEKWTESQWAQKLANKEKRAQMTDYDRFKLTAARVKRNR 393
            P    HS +S  ++   DAK+    TE+Q     A            + +  +++ KRN 
Sbjct: 1620 PAYTEHSSFSM-DDTSQDAKIEPSLTENQQPTTTATTTTTVPQQQQQQQQQKSSKKKRND 1678

Query: 394  ARTAVFKSLKXKAERAGT 447
             RTA  ++ +   +RA T
Sbjct: 1679 NRTAQNRTAENGVKRATT 1696


>AL132904-26|CAC35851.3| 2395|Caenorhabditis elegans Hypothetical
            protein Y111B2A.22 protein.
          Length = 2395

 Score = 28.7 bits (61), Expect = 3.7
 Identities = 20/78 (25%), Positives = 34/78 (43%)
 Frame = +1

Query: 214  PQIRVHSPYSSCEEAWTDAKLNEKWTESQWAQKLANKEKRAQMTDYDRFKLTAARVKRNR 393
            P    HS +S  ++   DAK+    TE+Q     A            + +  +++ KRN 
Sbjct: 1620 PAYTEHSSFSM-DDTSQDAKIEPSLTENQQPTTTATTTTTVPQQQQQQQQQKSSKKKRND 1678

Query: 394  ARTAVFKSLKXKAERAGT 447
             RTA  ++ +   +RA T
Sbjct: 1679 NRTAQNRTAENGVKRATT 1696


>U00068-1|AAA50745.1|   85|Caenorhabditis elegans Hypothetical
           protein W04D12.1 protein.
          Length = 85

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 12/29 (41%), Positives = 17/29 (58%)
 Frame = +1

Query: 277 NEKWTESQWAQKLANKEKRAQMTDYDRFK 363
           N KW     A K+A KEK+ +M D ++ K
Sbjct: 43  NRKWKRIDSAVKVAKKEKKKKMKDEEKKK 71


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,376,119
Number of Sequences: 27780
Number of extensions: 252752
Number of successful extensions: 680
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 662
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 680
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1423653030
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

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