Silkworm BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--0067
         (661 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z83113-8|CAB05549.1|  340|Caenorhabditis elegans Hypothetical pr...   120   1e-27
Z81042-6|CAB02797.1|  340|Caenorhabditis elegans Hypothetical pr...   120   1e-27
AF025469-5|AAG00029.1| 2054|Caenorhabditis elegans Hypothetical ...    33   0.24 
AY241928-1|AAO85277.1|  806|Caenorhabditis elegans xylosyltransf...    29   2.2  
AJ496235-1|CAD42732.1|  806|Caenorhabditis elegans peptide O-xyl...    29   2.2  
AC025722-4|AAK68509.3|  806|Caenorhabditis elegans Squashed vulv...    29   2.2  
Z78062-1|CAB01495.1|  447|Caenorhabditis elegans Hypothetical pr...    29   2.9  
AF022967-12|AAB69873.2|  467|Caenorhabditis elegans Hypothetical...    28   5.1  
U28991-2|AAK68307.1|  679|Caenorhabditis elegans Kinesin-associa...    27   8.9  
U28991-1|AAM22059.1|  696|Caenorhabditis elegans Kinesin-associa...    27   8.9  
AF149287-1|AAF99086.1|  696|Caenorhabditis elegans KAP protein.        27   8.9  
AB017107-1|BAA88838.1|  679|Caenorhabditis elegans Kinesin assoc...    27   8.9  

>Z83113-8|CAB05549.1|  340|Caenorhabditis elegans Hypothetical
           protein C27H6.8 protein.
          Length = 340

 Score =  120 bits (288), Expect = 1e-27
 Identities = 49/73 (67%), Positives = 57/73 (78%)
 Frame = +3

Query: 279 IGTHDGVFHCDEVLACFMLKNLPQYKDAEIIRTRDLNKLNDCDIVVDVGSVFDHEKKRYD 458
           IGTH G FHCDE  ACFMLK LPQ+KD  I+RTRD  +L  CDI+VDVG +FDH K+RYD
Sbjct: 5   IGTHSGKFHCDEAFACFMLKQLPQFKDHSILRTRDAAQLEKCDIIVDVGGIFDHSKQRYD 64

Query: 459 HHQAGFNETLSTL 497
           HHQ GF +T+ TL
Sbjct: 65  HHQRGFTDTMRTL 77



 Score = 44.8 bits (101), Expect = 6e-05
 Identities = 21/49 (42%), Positives = 33/49 (67%)
 Frame = +2

Query: 515 SYKIKLSSAGLVYAYYGEDIIQQLKEESTSLTNEDLKLIYKKVYESFIQ 661
           ++  KLSSAGLVYA+YG ++I Q+   + S +  D  L Y ++YE F++
Sbjct: 81  NFDTKLSSAGLVYAHYGREVINQILGGNVSSSMID--LFYHRLYEQFVE 127


>Z81042-6|CAB02797.1|  340|Caenorhabditis elegans Hypothetical
           protein C27H6.8 protein.
          Length = 340

 Score =  120 bits (288), Expect = 1e-27
 Identities = 49/73 (67%), Positives = 57/73 (78%)
 Frame = +3

Query: 279 IGTHDGVFHCDEVLACFMLKNLPQYKDAEIIRTRDLNKLNDCDIVVDVGSVFDHEKKRYD 458
           IGTH G FHCDE  ACFMLK LPQ+KD  I+RTRD  +L  CDI+VDVG +FDH K+RYD
Sbjct: 5   IGTHSGKFHCDEAFACFMLKQLPQFKDHSILRTRDAAQLEKCDIIVDVGGIFDHSKQRYD 64

Query: 459 HHQAGFNETLSTL 497
           HHQ GF +T+ TL
Sbjct: 65  HHQRGFTDTMRTL 77



 Score = 44.8 bits (101), Expect = 6e-05
 Identities = 21/49 (42%), Positives = 33/49 (67%)
 Frame = +2

Query: 515 SYKIKLSSAGLVYAYYGEDIIQQLKEESTSLTNEDLKLIYKKVYESFIQ 661
           ++  KLSSAGLVYA+YG ++I Q+   + S +  D  L Y ++YE F++
Sbjct: 81  NFDTKLSSAGLVYAHYGREVINQILGGNVSSSMID--LFYHRLYEQFVE 127


>AF025469-5|AAG00029.1| 2054|Caenorhabditis elegans Hypothetical
            protein W09B6.1a protein.
          Length = 2054

 Score = 32.7 bits (71), Expect = 0.24
 Identities = 14/37 (37%), Positives = 23/37 (62%)
 Frame = +3

Query: 342  LPQYKDAEIIRTRDLNKLNDCDIVVDVGSVFDHEKKR 452
            L +  DAEI++ R  N LN+C +V  + +++  EK R
Sbjct: 1396 LTEISDAEILKKRSANALNNCGMVAWIMTLYTPEKPR 1432


>AY241928-1|AAO85277.1|  806|Caenorhabditis elegans
           xylosyltransferase protein.
          Length = 806

 Score = 29.5 bits (63), Expect = 2.2
 Identities = 10/18 (55%), Positives = 11/18 (61%)
 Frame = +3

Query: 3   FGTRFAWKEXYCSXYFAF 56
           FGT+F WKE  C  Y  F
Sbjct: 634 FGTKFEWKEELCREYMGF 651


>AJ496235-1|CAD42732.1|  806|Caenorhabditis elegans peptide
           O-xylosyltransferase protein.
          Length = 806

 Score = 29.5 bits (63), Expect = 2.2
 Identities = 10/18 (55%), Positives = 11/18 (61%)
 Frame = +3

Query: 3   FGTRFAWKEXYCSXYFAF 56
           FGT+F WKE  C  Y  F
Sbjct: 634 FGTKFEWKEELCREYMGF 651


>AC025722-4|AAK68509.3|  806|Caenorhabditis elegans Squashed vulva
           protein 6 protein.
          Length = 806

 Score = 29.5 bits (63), Expect = 2.2
 Identities = 10/18 (55%), Positives = 11/18 (61%)
 Frame = +3

Query: 3   FGTRFAWKEXYCSXYFAF 56
           FGT+F WKE  C  Y  F
Sbjct: 634 FGTKFEWKEELCREYMGF 651


>Z78062-1|CAB01495.1|  447|Caenorhabditis elegans Hypothetical
           protein F16D3.1 protein.
          Length = 447

 Score = 29.1 bits (62), Expect = 2.9
 Identities = 17/46 (36%), Positives = 26/46 (56%), Gaps = 1/46 (2%)
 Frame = +1

Query: 109 CVETLNNE-FYNLIKYNVTYRNITYVMLNRILPRTCSLLNSASYNF 243
           C   ++NE  Y + K N+  R+ TY  LNR+L +  S + +AS  F
Sbjct: 200 CSFIMDNEAIYEITKVNLGVRSPTYTHLNRLLAQVVSSI-TASLRF 244


>AF022967-12|AAB69873.2|  467|Caenorhabditis elegans Hypothetical
           protein C13A2.1 protein.
          Length = 467

 Score = 28.3 bits (60), Expect = 5.1
 Identities = 17/52 (32%), Positives = 24/52 (46%)
 Frame = +1

Query: 55  LKYYIPN*IYHNR*HSTVCVETLNNEFYNLIKYNVTYRNITYVMLNRILPRT 210
           +KYY  +  Y NR     C   L  +F    K N    N+TY  + ++LP T
Sbjct: 400 MKYY--DLYYFNRRSGITCPGPLYCKFKQHPKINCMQANVTYSSMRKLLPIT 449


>U28991-2|AAK68307.1|  679|Caenorhabditis elegans Kinesin-associated
           protein protein1, isoform b protein.
          Length = 679

 Score = 27.5 bits (58), Expect = 8.9
 Identities = 14/43 (32%), Positives = 22/43 (51%)
 Frame = +3

Query: 426 SVFDHEKKRYDHHQAGFNETLSTLRPELETAIKLNLVQQALCM 554
           +  +HE KRYD   A   +T      +L+TAI+   +  A C+
Sbjct: 186 NAMEHETKRYDFWIAEMKKTDQETLRKLKTAIRKQAMLLAACV 228


>U28991-1|AAM22059.1|  696|Caenorhabditis elegans Kinesin-associated
           protein protein1, isoform a protein.
          Length = 696

 Score = 27.5 bits (58), Expect = 8.9
 Identities = 14/43 (32%), Positives = 22/43 (51%)
 Frame = +3

Query: 426 SVFDHEKKRYDHHQAGFNETLSTLRPELETAIKLNLVQQALCM 554
           +  +HE KRYD   A   +T      +L+TAI+   +  A C+
Sbjct: 203 NAMEHETKRYDFWIAEMKKTDQETLRKLKTAIRKQAMLLAACV 245


>AF149287-1|AAF99086.1|  696|Caenorhabditis elegans KAP protein.
          Length = 696

 Score = 27.5 bits (58), Expect = 8.9
 Identities = 14/43 (32%), Positives = 22/43 (51%)
 Frame = +3

Query: 426 SVFDHEKKRYDHHQAGFNETLSTLRPELETAIKLNLVQQALCM 554
           +  +HE KRYD   A   +T      +L+TAI+   +  A C+
Sbjct: 203 NAMEHETKRYDFWIAEMKKTDQETLRKLKTAIRKQAMLLAACV 245


>AB017107-1|BAA88838.1|  679|Caenorhabditis elegans Kinesin
           associated protein kap-1 protein.
          Length = 679

 Score = 27.5 bits (58), Expect = 8.9
 Identities = 14/43 (32%), Positives = 22/43 (51%)
 Frame = +3

Query: 426 SVFDHEKKRYDHHQAGFNETLSTLRPELETAIKLNLVQQALCM 554
           +  +HE KRYD   A   +T      +L+TAI+   +  A C+
Sbjct: 186 NAMEHETKRYDFWIAEMKKTDQETLRKLKTAIRKQAMLLAACV 228


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,082,299
Number of Sequences: 27780
Number of extensions: 247747
Number of successful extensions: 608
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 596
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 608
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1476380920
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)