Silkworm BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--0004
         (596 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z68318-8|CAH10783.1|  465|Caenorhabditis elegans Hypothetical pr...   127   5e-30
Z68318-3|CAD57704.1|  337|Caenorhabditis elegans Hypothetical pr...   127   5e-30
Z68318-2|CAA92692.1|  434|Caenorhabditis elegans Hypothetical pr...   127   5e-30
Z50016-1|CAA90318.1| 1106|Caenorhabditis elegans Hypothetical pr...    28   5.8  
AC024751-10|AAY55884.1|  654|Caenorhabditis elegans Hypothetical...    28   5.8  
EU051652-1|ABS85191.1|  973|Caenorhabditis elegans MEL-46 protein.     27   7.7  
CU457744-1|CAM36366.2|  973|Caenorhabditis elegans Hypothetical ...    27   7.7  

>Z68318-8|CAH10783.1|  465|Caenorhabditis elegans Hypothetical
           protein T21B10.2c protein.
          Length = 465

 Score =  127 bits (307), Expect = 5e-30
 Identities = 56/84 (66%), Positives = 66/84 (78%)
 Frame = +3

Query: 258 GKIDIGMDVAASEFFKDGKYDLDFKNPDSNPGDYLSSDKLADVYLDFIKDFPMVSIEDPF 437
           GKI IGMDVAASEFFKDGKYDLDFKNP S+   +LS ++L ++Y  FIK++P+VSIED F
Sbjct: 269 GKISIGMDVAASEFFKDGKYDLDFKNPASDSSKWLSGEQLTELYQSFIKEYPVVSIEDAF 328

Query: 438 DQDDWSAWANLTGRTPIQIVGDDL 509
           DQDDW  W    G T IQ+VGDDL
Sbjct: 329 DQDDWDNWGKFHGATSIQLVGDDL 352



 Score =  119 bits (287), Expect = 1e-27
 Identities = 55/73 (75%), Positives = 64/73 (87%)
 Frame = +1

Query: 34  LAMQEFMIFPTGASTFSEAMRMGSEVYHHLKKIIKEKFGLDSTAVGDEGGFAPNIQNNKD 213
           LAMQEFMI P GAS+F+EAMRMGSEVYHHLK  IK+++GLD+TAVGDEGGFAPNIQ+NK+
Sbjct: 194 LAMQEFMILPVGASSFAEAMRMGSEVYHHLKAEIKKRYGLDATAVGDEGGFAPNIQDNKE 253

Query: 214 ALYLIQDAIQKAG 252
            L L+  AI KAG
Sbjct: 254 GLDLLNTAIDKAG 266



 Score = 58.4 bits (135), Expect = 4e-09
 Identities = 25/29 (86%), Positives = 28/29 (96%)
 Frame = +2

Query: 509 TVTNPKRIATAVEKKACNCLLLKVNQIGS 595
           TVTNPKRI TA++KK+CNCLLLKVNQIGS
Sbjct: 353 TVTNPKRIQTAIDKKSCNCLLLKVNQIGS 381


>Z68318-3|CAD57704.1|  337|Caenorhabditis elegans Hypothetical
           protein T21B10.2b protein.
          Length = 337

 Score =  127 bits (307), Expect = 5e-30
 Identities = 56/84 (66%), Positives = 66/84 (78%)
 Frame = +3

Query: 258 GKIDIGMDVAASEFFKDGKYDLDFKNPDSNPGDYLSSDKLADVYLDFIKDFPMVSIEDPF 437
           GKI IGMDVAASEFFKDGKYDLDFKNP S+   +LS ++L ++Y  FIK++P+VSIED F
Sbjct: 141 GKISIGMDVAASEFFKDGKYDLDFKNPASDSSKWLSGEQLTELYQSFIKEYPVVSIEDAF 200

Query: 438 DQDDWSAWANLTGRTPIQIVGDDL 509
           DQDDW  W    G T IQ+VGDDL
Sbjct: 201 DQDDWDNWGKFHGATSIQLVGDDL 224



 Score = 58.4 bits (135), Expect = 4e-09
 Identities = 25/29 (86%), Positives = 28/29 (96%)
 Frame = +2

Query: 509 TVTNPKRIATAVEKKACNCLLLKVNQIGS 595
           TVTNPKRI TA++KK+CNCLLLKVNQIGS
Sbjct: 225 TVTNPKRIQTAIDKKSCNCLLLKVNQIGS 253


>Z68318-2|CAA92692.1|  434|Caenorhabditis elegans Hypothetical
           protein T21B10.2a protein.
          Length = 434

 Score =  127 bits (307), Expect = 5e-30
 Identities = 56/84 (66%), Positives = 66/84 (78%)
 Frame = +3

Query: 258 GKIDIGMDVAASEFFKDGKYDLDFKNPDSNPGDYLSSDKLADVYLDFIKDFPMVSIEDPF 437
           GKI IGMDVAASEFFKDGKYDLDFKNP S+   +LS ++L ++Y  FIK++P+VSIED F
Sbjct: 238 GKISIGMDVAASEFFKDGKYDLDFKNPASDSSKWLSGEQLTELYQSFIKEYPVVSIEDAF 297

Query: 438 DQDDWSAWANLTGRTPIQIVGDDL 509
           DQDDW  W    G T IQ+VGDDL
Sbjct: 298 DQDDWDNWGKFHGATSIQLVGDDL 321



 Score =  119 bits (287), Expect = 1e-27
 Identities = 55/73 (75%), Positives = 64/73 (87%)
 Frame = +1

Query: 34  LAMQEFMIFPTGASTFSEAMRMGSEVYHHLKKIIKEKFGLDSTAVGDEGGFAPNIQNNKD 213
           LAMQEFMI P GAS+F+EAMRMGSEVYHHLK  IK+++GLD+TAVGDEGGFAPNIQ+NK+
Sbjct: 163 LAMQEFMILPVGASSFAEAMRMGSEVYHHLKAEIKKRYGLDATAVGDEGGFAPNIQDNKE 222

Query: 214 ALYLIQDAIQKAG 252
            L L+  AI KAG
Sbjct: 223 GLDLLNTAIDKAG 235



 Score = 58.4 bits (135), Expect = 4e-09
 Identities = 25/29 (86%), Positives = 28/29 (96%)
 Frame = +2

Query: 509 TVTNPKRIATAVEKKACNCLLLKVNQIGS 595
           TVTNPKRI TA++KK+CNCLLLKVNQIGS
Sbjct: 322 TVTNPKRIQTAIDKKSCNCLLLKVNQIGS 350


>Z50016-1|CAA90318.1| 1106|Caenorhabditis elegans Hypothetical
           protein T21C12.1a protein.
          Length = 1106

 Score = 27.9 bits (59), Expect = 5.8
 Identities = 17/54 (31%), Positives = 27/54 (50%), Gaps = 6/54 (11%)
 Frame = -1

Query: 206 LFCMFGA-KPPSSPTAVESNPNFSLM-----IFFKWWYTSEPILMASLKVDAPV 63
           +FCM    KPPS  T+  S+ + +       I +KW  + EP    ++K DA +
Sbjct: 822 VFCMLAVTKPPSRMTSSSSSTSSTYAYSTAEIEYKWCTSKEPNCSTAVKADANI 875


>AC024751-10|AAY55884.1|  654|Caenorhabditis elegans Hypothetical
           protein Y18H1A.15 protein.
          Length = 654

 Score = 27.9 bits (59), Expect = 5.8
 Identities = 16/36 (44%), Positives = 20/36 (55%), Gaps = 1/36 (2%)
 Frame = -3

Query: 594 LPI*LTFNSRQLHAFFSTAVAIRLGFVTVDH-HQQS 490
           LP+ L+  S      FST +  RL F+TV H H QS
Sbjct: 377 LPVPLSICSAIFCLMFSTVLICRLAFITVVHEHAQS 412


>EU051652-1|ABS85191.1|  973|Caenorhabditis elegans MEL-46 protein.
          Length = 973

 Score = 27.5 bits (58), Expect = 7.7
 Identities = 11/25 (44%), Positives = 15/25 (60%)
 Frame = +3

Query: 282 VAASEFFKDGKYDLDFKNPDSNPGD 356
           V   EF+KD  Y +DF+ P + P D
Sbjct: 398 VKNQEFWKDLPYFIDFETPPTGPND 422


>CU457744-1|CAM36366.2|  973|Caenorhabditis elegans Hypothetical
           protein T06A10.1 protein.
          Length = 973

 Score = 27.5 bits (58), Expect = 7.7
 Identities = 11/25 (44%), Positives = 15/25 (60%)
 Frame = +3

Query: 282 VAASEFFKDGKYDLDFKNPDSNPGD 356
           V   EF+KD  Y +DF+ P + P D
Sbjct: 398 VKNQEFWKDLPYFIDFETPPTGPND 422


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,607,073
Number of Sequences: 27780
Number of extensions: 308110
Number of successful extensions: 762
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 738
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 762
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1268802960
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)