Silkworm BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte10a09
         (327 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z78067-9|CAB01528.2|  450|Caenorhabditis elegans Hypothetical pr...    27   4.2  
Z70211-2|CAA94158.2|  272|Caenorhabditis elegans Hypothetical pr...    25   9.7  

>Z78067-9|CAB01528.2|  450|Caenorhabditis elegans Hypothetical
           protein ZC412.1 protein.
          Length = 450

 Score = 26.6 bits (56), Expect = 4.2
 Identities = 9/23 (39%), Positives = 16/23 (69%)
 Frame = +3

Query: 51  SYQFYRNAEVKTLILLNISLCFD 119
           SY  Y +  +KT+++ N++LC D
Sbjct: 158 SYPLYYSQNLKTMVIENVTLCGD 180


>Z70211-2|CAA94158.2|  272|Caenorhabditis elegans Hypothetical
           protein K11E4.2 protein.
          Length = 272

 Score = 25.4 bits (53), Expect = 9.7
 Identities = 15/45 (33%), Positives = 23/45 (51%)
 Frame = -1

Query: 225 NISSCSTCKW*CTESRGRSMGRSKNRRVLHTYSYRDRSKG*YLKV 91
           NISS +   +   + R   +GR KN ++ H Y YR+     YL +
Sbjct: 92  NISSFTITCFHIQDGRTHLLGRYKNNQISH-YKYREIDGRHYLGI 135


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,493,553
Number of Sequences: 27780
Number of extensions: 75563
Number of successful extensions: 226
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 222
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 226
length of database: 12,740,198
effective HSP length: 71
effective length of database: 10,767,818
effective search space used: 398409266
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)