Silkworm BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte10a07
         (522 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U55366-1|AAA97980.2|  430|Caenorhabditis elegans Suppressor of c...    29   2.0  
AF419335-1|AAL15971.1|  430|Caenorhabditis elegans multisubstrat...    29   2.0  
M98552-4|AAP68923.1| 1353|Caenorhabditis elegans Hypothetical pr...    28   3.5  
M98552-3|AAP68922.1| 1342|Caenorhabditis elegans Hypothetical pr...    28   3.5  
Z69384-3|CAA93418.1|  475|Caenorhabditis elegans Hypothetical pr...    27   6.2  
Z82282-2|CAB05274.2|  544|Caenorhabditis elegans Hypothetical pr...    27   8.1  
Z69883-6|CAA93744.2|  461|Caenorhabditis elegans Hypothetical pr...    27   8.1  
U50301-2|AAM29675.1|  362|Caenorhabditis elegans Hypothetical pr...    27   8.1  

>U55366-1|AAA97980.2|  430|Caenorhabditis elegans Suppressor of clr
           protein 1 protein.
          Length = 430

 Score = 29.1 bits (62), Expect = 2.0
 Identities = 14/29 (48%), Positives = 17/29 (58%)
 Frame = +1

Query: 295 TLSPFPSDAPLTSMDVERALSFAPRRGTA 381
           T SP PSD    S+DV+R L+F   R  A
Sbjct: 398 TRSPTPSDIEYISVDVDRTLAFKQMRRAA 426


>AF419335-1|AAL15971.1|  430|Caenorhabditis elegans multisubstrate
           adaptor proteinSOC-1 protein.
          Length = 430

 Score = 29.1 bits (62), Expect = 2.0
 Identities = 14/29 (48%), Positives = 17/29 (58%)
 Frame = +1

Query: 295 TLSPFPSDAPLTSMDVERALSFAPRRGTA 381
           T SP PSD    S+DV+R L+F   R  A
Sbjct: 398 TRSPTPSDIEYISVDVDRTLAFKQMRRAA 426


>M98552-4|AAP68923.1| 1353|Caenorhabditis elegans Hypothetical protein
            ZK370.4b protein.
          Length = 1353

 Score = 28.3 bits (60), Expect = 3.5
 Identities = 10/17 (58%), Positives = 12/17 (70%)
 Frame = +3

Query: 351  VELRSASWHRGLQELWR 401
            VE R+ASW  G+  LWR
Sbjct: 993  VETRAASWFNGMSSLWR 1009


>M98552-3|AAP68922.1| 1342|Caenorhabditis elegans Hypothetical protein
            ZK370.4a protein.
          Length = 1342

 Score = 28.3 bits (60), Expect = 3.5
 Identities = 10/17 (58%), Positives = 12/17 (70%)
 Frame = +3

Query: 351  VELRSASWHRGLQELWR 401
            VE R+ASW  G+  LWR
Sbjct: 982  VETRAASWFNGMSSLWR 998


>Z69384-3|CAA93418.1|  475|Caenorhabditis elegans Hypothetical
           protein T11G6.3 protein.
          Length = 475

 Score = 27.5 bits (58), Expect = 6.2
 Identities = 12/38 (31%), Positives = 21/38 (55%)
 Frame = -2

Query: 515 FISVYLTRKTKNTVRTASYNIKRPVADIPQHPNHDSEQ 402
           ++ ++  RKT +TV+ +  N+    +  P  P  DSEQ
Sbjct: 35  YVLIHAARKTLSTVKPSLINVWTDNSSSPDGPLFDSEQ 72


>Z82282-2|CAB05274.2|  544|Caenorhabditis elegans Hypothetical
           protein T07G12.2 protein.
          Length = 544

 Score = 27.1 bits (57), Expect = 8.1
 Identities = 16/53 (30%), Positives = 25/53 (47%)
 Frame = +1

Query: 286 FEVTLSPFPSDAPLTSMDVERALSFAPRRGTAAFKSSGGCSLSWFGCWGMSAT 444
           F V L  F    P  SM+ ++A   A  +  + F    G  ++WF CW ++ T
Sbjct: 188 FVVLLEEFEVPMPAFSME-KKAFYTAKMKIFSQFPYLLGIMIAWFVCWILTIT 239


>Z69883-6|CAA93744.2|  461|Caenorhabditis elegans Hypothetical
           protein C27C12.2 protein.
          Length = 461

 Score = 27.1 bits (57), Expect = 8.1
 Identities = 17/65 (26%), Positives = 31/65 (47%)
 Frame = -2

Query: 443 VADIPQHPNHDSEQPPELLKAAVPRRGAKLNARSTSILVRGASLGNGDSVTSNAHRSSYS 264
           V  +P  P   SE  P  L +++     + N+R ++++ R        S+T +   SS S
Sbjct: 233 VLHVPTLPRKTSE--PSHLGSSLQNEHPQSNSRPSTVIPRVQRTNTSASLTRSMDHSSMS 290

Query: 263 GMAAH 249
            ++AH
Sbjct: 291 PISAH 295


>U50301-2|AAM29675.1|  362|Caenorhabditis elegans Hypothetical
           protein F20D6.5 protein.
          Length = 362

 Score = 27.1 bits (57), Expect = 8.1
 Identities = 12/36 (33%), Positives = 18/36 (50%)
 Frame = +3

Query: 312 ERRSSDEYGRRARVELRSASWHRGLQELWRLFAVVV 419
           E+     Y  RA V+ +S +W    Q+L RLF   +
Sbjct: 244 EKHCDGSYKFRAIVDFQSVNWGNAAQDLSRLFVTAM 279


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,212,083
Number of Sequences: 27780
Number of extensions: 195575
Number of successful extensions: 696
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 677
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 696
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1017709248
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)