Silkworm BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmov10b09
         (428 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U97005-4|AAB52283.1|  314|Caenorhabditis elegans Hypothetical pr...    32   0.15 
Z71265-5|CAA95836.1|  481|Caenorhabditis elegans Hypothetical pr...    28   3.3  
U41274-7|AAA82463.1| 1610|Caenorhabditis elegans Hypothetical pr...    26   10.0 

>U97005-4|AAB52283.1|  314|Caenorhabditis elegans Hypothetical
           protein F19F10.5 protein.
          Length = 314

 Score = 32.3 bits (70), Expect = 0.15
 Identities = 12/27 (44%), Positives = 17/27 (62%)
 Frame = -3

Query: 405 QILTFGLLFILHFFIARCFFGFIISIF 325
           Q +  G LF+L FFI  CFF  +++ F
Sbjct: 20  QFIVIGYLFLLRFFILICFFKLLLTFF 46


>Z71265-5|CAA95836.1|  481|Caenorhabditis elegans Hypothetical
           protein M05B5.6 protein.
          Length = 481

 Score = 27.9 bits (59), Expect = 3.3
 Identities = 16/37 (43%), Positives = 18/37 (48%)
 Frame = -3

Query: 426 FILLRINQILTFGLLFILHFFIARCFFGFIISIFTCI 316
           F  L I   L F LL   H F    F  F+I+IFT I
Sbjct: 92  FYSLHILAFLVFFLLLAWHVFSRNLFKDFLITIFTGI 128


>U41274-7|AAA82463.1| 1610|Caenorhabditis elegans Hypothetical
           protein T04G9.1 protein.
          Length = 1610

 Score = 26.2 bits (55), Expect = 10.0
 Identities = 13/32 (40%), Positives = 18/32 (56%), Gaps = 1/32 (3%)
 Frame = +2

Query: 200 DRVLSLDQG-PGRVLEAVAPLGLHPAHDLGLA 292
           D +L  + G PGR + +V P G  P H + LA
Sbjct: 5   DEILRREFGQPGRSMASVFPYGGQPVHGVSLA 36


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,385,047
Number of Sequences: 27780
Number of extensions: 135553
Number of successful extensions: 335
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 329
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 335
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 713998766
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)