Silkworm BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmov10b07
         (684 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81506-4|CAB04131.1|  191|Caenorhabditis elegans Hypothetical pr...    31   0.58 
U40423-3|AAA81452.1|  327|Caenorhabditis elegans Hypothetical pr...    29   3.1  
Z66515-2|CAA91353.1|  543|Caenorhabditis elegans Hypothetical pr...    27   9.4  
S66757-1|AAB28819.1|  581|Caenorhabditis elegans Egl-43 protein.       27   9.4  

>Z81506-4|CAB04131.1|  191|Caenorhabditis elegans Hypothetical
           protein F16H6.5 protein.
          Length = 191

 Score = 31.5 bits (68), Expect = 0.58
 Identities = 18/48 (37%), Positives = 23/48 (47%)
 Frame = +2

Query: 224 DKELKIEENPRVYCGRHLANARMVLCYDTVEKRAQSYLDANIISAGDL 367
           DK+ KI E  RV C      AR  +  + V K    Y+D+N    GDL
Sbjct: 116 DKKGKIPEGGRVKCAGTETGARSNVKCEEVAKEVNEYIDSNKDKFGDL 163


>U40423-3|AAA81452.1|  327|Caenorhabditis elegans Hypothetical
           protein C24H10.2 protein.
          Length = 327

 Score = 29.1 bits (62), Expect = 3.1
 Identities = 14/53 (26%), Positives = 23/53 (43%)
 Frame = -2

Query: 314 RQCHSRVPCVRWPNDVRNRPEDFPQFSTLCRGRQHSPAPQRSGNTAETSWYSC 156
           R+CH   P +  PND +N  ++  +    C      P P   G+  + S+  C
Sbjct: 140 RKCHQMTPKIIPPNDAKNFLQNLRRIDVRCSALY--PRPPAPGDKEKKSYRMC 190


>Z66515-2|CAA91353.1|  543|Caenorhabditis elegans Hypothetical
           protein R53.3a protein.
          Length = 543

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 14/34 (41%), Positives = 18/34 (52%), Gaps = 1/34 (2%)
 Frame = -2

Query: 305 HSRVPCVRWPNDVRNRPEDFPQFSTLCRGRQ-HS 207
           HS + C   P      P+ + QFS LCR R+ HS
Sbjct: 177 HSHIHCSLKPFRCHLCPKSYTQFSNLCRHRRVHS 210


>S66757-1|AAB28819.1|  581|Caenorhabditis elegans Egl-43 protein.
          Length = 581

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 14/34 (41%), Positives = 18/34 (52%), Gaps = 1/34 (2%)
 Frame = -2

Query: 305 HSRVPCVRWPNDVRNRPEDFPQFSTLCRGRQ-HS 207
           HS + C   P      P+ + QFS LCR R+ HS
Sbjct: 177 HSHIHCSLKPFRCHLCPKSYTQFSNLCRHRRVHS 210


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,920,297
Number of Sequences: 27780
Number of extensions: 271341
Number of successful extensions: 612
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 607
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 612
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1560745544
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)