Silkworm BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmov10b05
         (707 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC024880-7|AAF60911.1|  124|Caenorhabditis elegans Hypothetical ...    79   3e-15
AF067945-11|AAV28330.1| 1604|Caenorhabditis elegans Mechanosenso...    30   1.9  
AF067945-10|AAV28329.1| 1818|Caenorhabditis elegans Mechanosenso...    30   1.9  
AF067945-9|AAV28328.1| 1954|Caenorhabditis elegans Mechanosensor...    30   1.9  
AF067945-5|AAV28325.1| 1685|Caenorhabditis elegans Mechanosensor...    30   1.9  
AF067945-4|AAV28327.1| 1995|Caenorhabditis elegans Mechanosensor...    30   1.9  
AF067945-3|AAV28331.1| 2006|Caenorhabditis elegans Mechanosensor...    30   1.9  
AF067945-2|AAV28324.1| 2007|Caenorhabditis elegans Mechanosensor...    30   1.9  

>AC024880-7|AAF60911.1|  124|Caenorhabditis elegans Hypothetical
           protein Y97E10AR.7 protein.
          Length = 124

 Score = 79.0 bits (186), Expect = 3e-15
 Identities = 50/126 (39%), Positives = 76/126 (60%), Gaps = 3/126 (2%)
 Frame = +3

Query: 48  MLKPKALTEVLSQANTGGVENTLLLNHQGALLAYSGYNDK--DARVTAAIASNVWSAYEK 221
           MLK KAL +VL Q NT GV+ + L N +G LLAY G   K   + V++A+ ++VW+A E+
Sbjct: 1   MLKQKALVDVLGQVNTSGVDGSWLFNKEGLLLAYVGSEQKAVASNVSSALIASVWAALER 60

Query: 222 HGRNVFKEDGLHLILVDCLNGKIAITQVA-NLLLCLYANEAVGFGILKEKINAIAQYLEG 398
              N  KE     ILV   NG I  T VA  +LL + A+++   G+++ K++ +A YLE 
Sbjct: 61  RA-NDLKE----TILV-LENGVIGCTLVARTMLLAVKADKSADLGMVRAKLHTLAAYLEQ 114

Query: 399 PLKQVA 416
           P+  ++
Sbjct: 115 PILSIS 120


>AF067945-11|AAV28330.1| 1604|Caenorhabditis elegans Mechanosensory
            abnormality protein1, isoform g protein.
          Length = 1604

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 14/40 (35%), Positives = 22/40 (55%)
 Frame = +2

Query: 263  TSRLFKWENCNHTSCQFITVSLCE*GCWFWHSERKNQCYC 382
            T R F +  C   S +F+TVS CE  C+ ++S  + +  C
Sbjct: 1155 TCRPFAYSGCGGNSNRFMTVSQCENLCFAFNSMNEAEVDC 1194


>AF067945-10|AAV28329.1| 1818|Caenorhabditis elegans Mechanosensory
            abnormality protein1, isoform f protein.
          Length = 1818

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 14/40 (35%), Positives = 22/40 (55%)
 Frame = +2

Query: 263  TSRLFKWENCNHTSCQFITVSLCE*GCWFWHSERKNQCYC 382
            T R F +  C   S +F+TVS CE  C+ ++S  + +  C
Sbjct: 1369 TCRPFAYSGCGGNSNRFMTVSQCENLCFAFNSMNEAEVDC 1408


>AF067945-9|AAV28328.1| 1954|Caenorhabditis elegans Mechanosensory
            abnormality protein1, isoform e protein.
          Length = 1954

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 14/40 (35%), Positives = 22/40 (55%)
 Frame = +2

Query: 263  TSRLFKWENCNHTSCQFITVSLCE*GCWFWHSERKNQCYC 382
            T R F +  C   S +F+TVS CE  C+ ++S  + +  C
Sbjct: 1505 TCRPFAYSGCGGNSNRFMTVSQCENLCFAFNSMNEAEVDC 1544


>AF067945-5|AAV28325.1| 1685|Caenorhabditis elegans Mechanosensory
            abnormality protein1, isoform b protein.
          Length = 1685

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 14/40 (35%), Positives = 22/40 (55%)
 Frame = +2

Query: 263  TSRLFKWENCNHTSCQFITVSLCE*GCWFWHSERKNQCYC 382
            T R F +  C   S +F+TVS CE  C+ ++S  + +  C
Sbjct: 1554 TCRPFAYSGCGGNSNRFMTVSQCENLCFAFNSMNEAEVDC 1593


>AF067945-4|AAV28327.1| 1995|Caenorhabditis elegans Mechanosensory
            abnormality protein1, isoform d protein.
          Length = 1995

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 14/40 (35%), Positives = 22/40 (55%)
 Frame = +2

Query: 263  TSRLFKWENCNHTSCQFITVSLCE*GCWFWHSERKNQCYC 382
            T R F +  C   S +F+TVS CE  C+ ++S  + +  C
Sbjct: 1546 TCRPFAYSGCGGNSNRFMTVSQCENLCFAFNSMNEAEVDC 1585


>AF067945-3|AAV28331.1| 2006|Caenorhabditis elegans Mechanosensory
            abnormality protein1, isoform h protein.
          Length = 2006

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 14/40 (35%), Positives = 22/40 (55%)
 Frame = +2

Query: 263  TSRLFKWENCNHTSCQFITVSLCE*GCWFWHSERKNQCYC 382
            T R F +  C   S +F+TVS CE  C+ ++S  + +  C
Sbjct: 1557 TCRPFAYSGCGGNSNRFMTVSQCENLCFAFNSMNEAEVDC 1596


>AF067945-2|AAV28324.1| 2007|Caenorhabditis elegans Mechanosensory
            abnormality protein1, isoform a protein.
          Length = 2007

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 14/40 (35%), Positives = 22/40 (55%)
 Frame = +2

Query: 263  TSRLFKWENCNHTSCQFITVSLCE*GCWFWHSERKNQCYC 382
            T R F +  C   S +F+TVS CE  C+ ++S  + +  C
Sbjct: 1558 TCRPFAYSGCGGNSNRFMTVSQCENLCFAFNSMNEAEVDC 1597


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,029,366
Number of Sequences: 27780
Number of extensions: 259610
Number of successful extensions: 521
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 504
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 521
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1645110168
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)