Silkworm BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc10b03
         (568 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z70684-7|CAA94601.1|  143|Caenorhabditis elegans Hypothetical pr...   263   7e-71
Z92838-1|CAB07406.1|  157|Caenorhabditis elegans Hypothetical pr...    51   7e-07
AC084196-2|AAK39622.1|  355|Caenorhabditis elegans Hypothetical ...    30   1.0  
U41011-4|AAA82287.1|  294|Caenorhabditis elegans Hypothetical pr...    29   3.1  
AL132898-6|CAC14409.1|  187|Caenorhabditis elegans Hypothetical ...    28   5.4  
AL132898-5|CAC14408.1|  316|Caenorhabditis elegans Hypothetical ...    28   5.4  
Z81128-8|CAB03402.1|  811|Caenorhabditis elegans Hypothetical pr...    27   7.1  
AC084156-1|AAK68491.2|  466|Caenorhabditis elegans Hypothetical ...    27   9.4  

>Z70684-7|CAA94601.1|  143|Caenorhabditis elegans Hypothetical
           protein F28D1.7 protein.
          Length = 143

 Score =  263 bits (644), Expect = 7e-71
 Identities = 118/143 (82%), Positives = 132/143 (92%)
 Frame = +2

Query: 41  MGKPRGIRTARKHVNHRREQRWADKEFKKAHMGTKWKANPFGGASHAKGIVLEKVGVEAK 220
           MGKP+G+ TARK   HR+EQRW DK +KKAH+GT+WK+NPFGGASHAKGIVLEK+GVEAK
Sbjct: 1   MGKPKGLCTARKLKTHRQEQRWNDKRYKKAHIGTRWKSNPFGGASHAKGIVLEKIGVEAK 60

Query: 221 QPNSAIRKCVRVQLIKNGKKVTAFVPRDGCLNHIEENDEVLVAGFGRKGHAVGDIPGVRF 400
           QPNSAIRKCVRVQLIKNGKK+TAFVP DGCLN +EENDEVLV+GFGR GHAVGDIPGVRF
Sbjct: 61  QPNSAIRKCVRVQLIKNGKKITAFVPNDGCLNFVEENDEVLVSGFGRSGHAVGDIPGVRF 120

Query: 401 KVVKVANVSLLALYKEKKERPRS 469
           K+VKVAN SL+AL+K KKERPRS
Sbjct: 121 KIVKVANTSLIALFKGKKERPRS 143


>Z92838-1|CAB07406.1|  157|Caenorhabditis elegans Hypothetical
           protein T03D8.2 protein.
          Length = 157

 Score = 50.8 bits (116), Expect = 7e-07
 Identities = 30/66 (45%), Positives = 43/66 (65%)
 Frame = +2

Query: 167 GASHAKGIVLEKVGVEAKQPNSAIRKCVRVQLIKNGKKVTAFVPRDGCLNHIEENDEVLV 346
           G SH KGIVL+ V    K+PNS  RKC  V+L   G +V A++P  G  ++++E+ +VLV
Sbjct: 72  GYSHYKGIVLKTVIRHPKKPNSGNRKCAIVRL-STGAEVCAYIPNVG--HNLQEHSQVLV 128

Query: 347 AGFGRK 364
            G GR+
Sbjct: 129 KG-GRR 133


>AC084196-2|AAK39622.1|  355|Caenorhabditis elegans Hypothetical
           protein Y55D5A.3 protein.
          Length = 355

 Score = 30.3 bits (65), Expect = 1.0
 Identities = 25/98 (25%), Positives = 38/98 (38%)
 Frame = -1

Query: 385 NVTDGVTFTTESRH*YXXXXXXXX*ATVTGDECGHFLSVLNELYTDAFADGRVGLLSFYT 206
           N+T  V F       Y           +TG   G +   LN  Y+ A+ D    L+ FYT
Sbjct: 150 NITIHVDFVRNGTIQYSGLTFALYNGVLTGQRPGEYSVSLNARYSGAYIDNI--LMEFYT 207

Query: 205 NFLEDDALCVRCTTERVSLPFRTHVGFLEFFVRPSLFT 92
            F    +  +R   E  +    T+   ++ F R  LF+
Sbjct: 208 KFKRPVSFFIRDVLENQA----TYTEAVDAFSRTHLFS 241


>U41011-4|AAA82287.1|  294|Caenorhabditis elegans Hypothetical
           protein D2024.4 protein.
          Length = 294

 Score = 28.7 bits (61), Expect = 3.1
 Identities = 11/21 (52%), Positives = 14/21 (66%)
 Frame = -1

Query: 112 VRPSLFTTVVHVLTRRSYSSG 50
           VRP + TTV+HV+ R    SG
Sbjct: 189 VRPGIMTTVIHVMDRNPMKSG 209


>AL132898-6|CAC14409.1|  187|Caenorhabditis elegans Hypothetical
           protein Y59A8B.9 protein.
          Length = 187

 Score = 27.9 bits (59), Expect = 5.4
 Identities = 11/25 (44%), Positives = 16/25 (64%)
 Frame = -2

Query: 405 TLKRTPGMSPTA*PLRPNPATSTSS 331
           T  RTP  +P A P RP P+ S+++
Sbjct: 38  TTMRTPAATPAAPPTRPTPSRSSAA 62


>AL132898-5|CAC14408.1|  316|Caenorhabditis elegans Hypothetical
           protein Y59A8B.7 protein.
          Length = 316

 Score = 27.9 bits (59), Expect = 5.4
 Identities = 11/25 (44%), Positives = 16/25 (64%)
 Frame = -2

Query: 405 TLKRTPGMSPTA*PLRPNPATSTSS 331
           T  RTP  +P A P RP P+ S+++
Sbjct: 167 TTMRTPAATPAAPPTRPTPSRSSAA 191


>Z81128-8|CAB03402.1|  811|Caenorhabditis elegans Hypothetical
           protein T23D8.9a protein.
          Length = 811

 Score = 27.5 bits (58), Expect = 7.1
 Identities = 11/16 (68%), Positives = 13/16 (81%)
 Frame = +2

Query: 284 TAFVPRDGCLNHIEEN 331
           T FVP+DG LN I+EN
Sbjct: 653 TPFVPKDGVLNVIDEN 668


>AC084156-1|AAK68491.2|  466|Caenorhabditis elegans Hypothetical
           protein Y46E12BL.4 protein.
          Length = 466

 Score = 27.1 bits (57), Expect = 9.4
 Identities = 16/46 (34%), Positives = 25/46 (54%), Gaps = 2/46 (4%)
 Frame = -1

Query: 136 HVGFLEFFVRPSLFTTVVHVLTRRS--YSSGFTHLDSTTPIGYGWE 5
           HV  +E+  R      VV V T+ +  +++G+T L  TT   YGW+
Sbjct: 158 HVWQIEWPERQRGTHAVVGVATKNAPLHAAGYTALIGTTDESYGWD 203


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,174,669
Number of Sequences: 27780
Number of extensions: 313029
Number of successful extensions: 819
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 777
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 817
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1176726318
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)