Silkworm BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt10a03
         (714 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z66498-2|CAA91291.2|  419|Caenorhabditis elegans Hypothetical pr...    32   0.47 
Z70681-1|CAA94580.1|  307|Caenorhabditis elegans Hypothetical pr...    31   0.82 
AF003133-3|AAB54138.2| 2192|Caenorhabditis elegans Low-density l...    31   1.1  
U80837-5|AAB37901.1|  455|Caenorhabditis elegans Hypothetical pr...    30   1.9  
U29380-14|AAA68746.2|  293|Caenorhabditis elegans Trypsin-like p...    30   1.9  
U97593-6|AAB52879.2|  925|Caenorhabditis elegans Prion-like-(q/n...    29   2.5  
U97593-5|AAB52880.1| 1175|Caenorhabditis elegans Prion-like-(q/n...    29   2.5  
U28941-5|AAM98026.2|  989|Caenorhabditis elegans Hypothetical pr...    29   2.5  
AY314775-1|AAQ84882.1|  971|Caenorhabditis elegans methuselah-li...    29   2.5  
U97550-1|AAK18983.2| 1065|Caenorhabditis elegans Hypothetical pr...    28   5.8  
Z93397-3|CAB07720.2|  376|Caenorhabditis elegans Hypothetical pr...    28   7.6  

>Z66498-2|CAA91291.2|  419|Caenorhabditis elegans Hypothetical
           protein M195.2 protein.
          Length = 419

 Score = 31.9 bits (69), Expect = 0.47
 Identities = 14/34 (41%), Positives = 18/34 (52%)
 Frame = +1

Query: 373 CEHRTSNTCHPLRPKHPAGCYYPTRCRNTPGYFC 474
           C+   +N+C  L P+   GC  PT CRNT    C
Sbjct: 275 CQTGCANSCAQLSPQPTEGC--PTNCRNTCNEVC 306


>Z70681-1|CAA94580.1|  307|Caenorhabditis elegans Hypothetical
           protein C30F2.1 protein.
          Length = 307

 Score = 31.1 bits (67), Expect = 0.82
 Identities = 19/48 (39%), Positives = 24/48 (50%), Gaps = 4/48 (8%)
 Frame = +1

Query: 397 CHPLRPKHPAGCYYPTRCRNTPGYFC*SARMG--NYRS--RRQCI*RQ 528
           C P+RPK P G   P  CR  PG      R G  NY +   ++CI R+
Sbjct: 102 CEPIRPKCPPGPPGPPGCRGEPGPSGLPGRRGINNYETLPLKKCIWRE 149


>AF003133-3|AAB54138.2| 2192|Caenorhabditis elegans Low-density
            lipoprotein receptorrelated protein 2 protein.
          Length = 2192

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 15/35 (42%), Positives = 19/35 (54%), Gaps = 3/35 (8%)
 Frame = +1

Query: 373  CEHRTS--NT-CHPLRPKHPAGCYYPTRCRNTPGY 468
            CE   +  NT C P+  K P  C+   RC +TPGY
Sbjct: 1863 CEQNAAAHNTDCSPICQKQPNWCHNGGRCLDTPGY 1897


>U80837-5|AAB37901.1|  455|Caenorhabditis elegans Hypothetical
           protein F07E5.1 protein.
          Length = 455

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 15/27 (55%), Positives = 19/27 (70%)
 Frame = +3

Query: 150 YSYPS*INGSNSALVLFSPTTTTFQLL 230
           YSYPS I   +S +V+ + TTTTF LL
Sbjct: 75  YSYPSPIVLEHSFVVMTTTTTTTFSLL 101


>U29380-14|AAA68746.2|  293|Caenorhabditis elegans Trypsin-like
           protease protein 1 protein.
          Length = 293

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 18/65 (27%), Positives = 29/65 (44%)
 Frame = +2

Query: 485 GWGTTVQGGSVSDGNLHKLELIVTNKENCREQYKGHDRVVTDNKFCAGLVRAGGRDYDNT 664
           GWG+T++G S+S   L ++ + + +   C        R+   +  CAG    G  D    
Sbjct: 181 GWGSTIEGSSLSAPTLREIHVPLLSTLFCSSLPNYIGRIHLPSMLCAG-YSYGKIDSCQG 239

Query: 665 DLGAP 679
           D G P
Sbjct: 240 DSGGP 244


>U97593-6|AAB52879.2|  925|Caenorhabditis elegans
           Prion-like-(q/n-rich)-domain-bearingprotein protein 22,
           isoform c protein.
          Length = 925

 Score = 29.5 bits (63), Expect = 2.5
 Identities = 15/35 (42%), Positives = 17/35 (48%)
 Frame = -2

Query: 680 QGHPSQYCRSRGHQPGPNRRRICYQSRRDHDPCTV 576
           +GH       RGH P P R R  Y +   HDPC V
Sbjct: 221 KGHVPGDANYRGHGPDPPRLRPKY-TADSHDPCNV 254


>U97593-5|AAB52880.1| 1175|Caenorhabditis elegans
           Prion-like-(q/n-rich)-domain-bearingprotein protein 22,
           isoform a protein.
          Length = 1175

 Score = 29.5 bits (63), Expect = 2.5
 Identities = 15/35 (42%), Positives = 17/35 (48%)
 Frame = -2

Query: 680 QGHPSQYCRSRGHQPGPNRRRICYQSRRDHDPCTV 576
           +GH       RGH P P R R  Y +   HDPC V
Sbjct: 340 KGHVPGDANYRGHGPDPPRLRPKY-TADSHDPCNV 373


>U28941-5|AAM98026.2|  989|Caenorhabditis elegans Hypothetical
           protein F31D5.4 protein.
          Length = 989

 Score = 29.5 bits (63), Expect = 2.5
 Identities = 26/101 (25%), Positives = 44/101 (43%), Gaps = 1/101 (0%)
 Frame = +3

Query: 153 SYPS*INGSNSALVLFSPTTTTFQLLPVSMENSTILHTVAL-SLDLPVAVSPVKYLMFTL 329
           S PS    S++     +  TTT  ++P +   +TI  T  + S+     V+       T+
Sbjct: 220 STPSSTEASSTVTSTTTARTTT-TMIPTTPTTTTIASTSTVTSIVTSTTVTSTTVPTTTV 278

Query: 330 LLTIPNSLRRITTRM*ASYE*HMPSTSAQTSSRVLLSNKVS 452
           + T+P +    T+   AS     PSTS  T++    +N  S
Sbjct: 279 VTTVPTTTATSTSTSTASTTTTTPSTSTHTTTVTYSTNATS 319


>AY314775-1|AAQ84882.1|  971|Caenorhabditis elegans methuselah-like
           protein MTH-2 protein.
          Length = 971

 Score = 29.5 bits (63), Expect = 2.5
 Identities = 26/101 (25%), Positives = 44/101 (43%), Gaps = 1/101 (0%)
 Frame = +3

Query: 153 SYPS*INGSNSALVLFSPTTTTFQLLPVSMENSTILHTVAL-SLDLPVAVSPVKYLMFTL 329
           S PS    S++     +  TTT  ++P +   +TI  T  + S+     V+       T+
Sbjct: 202 STPSSTEASSTVTSTTTARTTT-TMIPTTPTTTTIASTSTVTSIVTSTTVTSTTVPTTTV 260

Query: 330 LLTIPNSLRRITTRM*ASYE*HMPSTSAQTSSRVLLSNKVS 452
           + T+P +    T+   AS     PSTS  T++    +N  S
Sbjct: 261 VTTVPTTTATSTSTSTASTTTTTPSTSTHTTTVTYSTNATS 301


>U97550-1|AAK18983.2| 1065|Caenorhabditis elegans Hypothetical protein
            T20F7.5 protein.
          Length = 1065

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 20/62 (32%), Positives = 31/62 (50%)
 Frame = -3

Query: 241  METGSS*KVVVVGENNTSALLEPLIQDG*EYFNLDQAGMLANRHRSTEIASSAAADGSEH 62
            +E  SS  V    E+     +EP++++  +Y +LD   M + RHRS +I S    D   H
Sbjct: 907  LERKSSSTVPEKNEDELRVEIEPIMKELSDYESLD---MRSIRHRSDKIDSYFDLDSEFH 963

Query: 61   SY 56
             Y
Sbjct: 964  DY 965


>Z93397-3|CAB07720.2|  376|Caenorhabditis elegans Hypothetical
           protein ZC482.6 protein.
          Length = 376

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 19/71 (26%), Positives = 30/71 (42%)
 Frame = +2

Query: 170 QWFQQCAGIVLTNYHYLSTATCFHGEFYDPAYRRIIAGSSRRSEPGEISYVHFAVNHPEF 349
           ++F+Q    VLT   + S A CF   F    YR  +    R   P  +  +  +V HP  
Sbjct: 307 RFFEQAQSFVLTFQIFNSVAHCFICFFLSSQYRETVKTMIRIKTPPTVMVLESSV-HPTT 365

Query: 350 SEENYDKDVSI 382
            E +   ++ I
Sbjct: 366 RETSKTSNLVI 376


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,867,170
Number of Sequences: 27780
Number of extensions: 412425
Number of successful extensions: 1172
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1110
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1172
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1666201324
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)