Silkworm BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt10a01
         (650 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF098505-3|AAL27269.2|  578|Caenorhabditis elegans Hypothetical ...    29   2.9  
AF098505-2|AAC67416.2|  814|Caenorhabditis elegans Hypothetical ...    29   2.9  
Z81109-3|CAB03246.1|  318|Caenorhabditis elegans Hypothetical pr...    27   8.7  

>AF098505-3|AAL27269.2|  578|Caenorhabditis elegans Hypothetical
           protein Y71H10A.1b protein.
          Length = 578

 Score = 29.1 bits (62), Expect = 2.9
 Identities = 20/61 (32%), Positives = 30/61 (49%)
 Frame = -1

Query: 503 DLEQTNLFVKQIFDRNGNQTNDTRLNVLCGTALLGHTLNT**PFSVNEHTQIETKVLLFM 324
           D   T  FV+ +FD  G +   TR+NVL G    G +     PF  N  T++  + L F+
Sbjct: 464 DKNLTTDFVQNLFDSEGKKNFTTRVNVL-GHVQQGGSPT---PFDRNMGTKLAARALEFL 519

Query: 323 V 321
           +
Sbjct: 520 L 520


>AF098505-2|AAC67416.2|  814|Caenorhabditis elegans Hypothetical
           protein Y71H10A.1a protein.
          Length = 814

 Score = 29.1 bits (62), Expect = 2.9
 Identities = 20/61 (32%), Positives = 30/61 (49%)
 Frame = -1

Query: 503 DLEQTNLFVKQIFDRNGNQTNDTRLNVLCGTALLGHTLNT**PFSVNEHTQIETKVLLFM 324
           D   T  FV+ +FD  G +   TR+NVL G    G +     PF  N  T++  + L F+
Sbjct: 667 DKNLTTDFVQNLFDSEGKKNFTTRVNVL-GHVQQGGSPT---PFDRNMGTKLAARALEFL 722

Query: 323 V 321
           +
Sbjct: 723 L 723


>Z81109-3|CAB03246.1|  318|Caenorhabditis elegans Hypothetical
           protein R10D12.5 protein.
          Length = 318

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 12/37 (32%), Positives = 19/37 (51%)
 Frame = -2

Query: 361 NILKSRPRSYFLWYDAIMPPVLNNTTAIIPIEFKPNI 251
           N   S P S   W D ++   ++NT  +I + F+ NI
Sbjct: 67  NFSSSIPNSAPTWNDCVVQCYISNTCVVIVLNFERNI 103


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,716,260
Number of Sequences: 27780
Number of extensions: 300552
Number of successful extensions: 536
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 531
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 536
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1444744186
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)