Silkworm BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= an--0034
         (684 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL132948-22|CAD31825.2| 1408|Caenorhabditis elegans Hypothetical...    28   5.4  
AF067945-13|AAC17676.2|  308|Caenorhabditis elegans Serpentine r...    28   7.1  
AL132877-9|CAC70109.2|  529|Caenorhabditis elegans Hypothetical ...    27   9.4  

>AL132948-22|CAD31825.2| 1408|Caenorhabditis elegans Hypothetical
            protein Y39B6A.30 protein.
          Length = 1408

 Score = 28.3 bits (60), Expect = 5.4
 Identities = 13/33 (39%), Positives = 23/33 (69%), Gaps = 1/33 (3%)
 Frame = +3

Query: 357  YIPLIY-FKSKSLSKIEV*NSKLKFKNT*YIIN 452
            Y PL + F SK+ +++++   ++K KNT YI+N
Sbjct: 1187 YFPLWFPFLSKTKNQLKIGRFEIKIKNTEYILN 1219


>AF067945-13|AAC17676.2|  308|Caenorhabditis elegans Serpentine
           receptor, class x protein59 protein.
          Length = 308

 Score = 27.9 bits (59), Expect = 7.1
 Identities = 9/32 (28%), Positives = 21/32 (65%)
 Frame = -3

Query: 469 SNEVLTFIIYYVFLNFNFEFYTSIFESDFDLK 374
           + +++ F+I+ + L F+F FY  +   +++LK
Sbjct: 121 NTKIIIFLIFILTLGFSFSFYEVLCSLEYNLK 152


>AL132877-9|CAC70109.2|  529|Caenorhabditis elegans Hypothetical
           protein Y105E8B.3 protein.
          Length = 529

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 10/23 (43%), Positives = 18/23 (78%)
 Frame = +2

Query: 68  DLYIGID*EVSDLCIYTYRIPRS 136
           D+Y+G D E++DLC+  +R+ R+
Sbjct: 108 DVYVGGDPELNDLCLKFHRLGRT 130


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,781,337
Number of Sequences: 27780
Number of extensions: 200735
Number of successful extensions: 304
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 303
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 304
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1560745544
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)