Silkworm BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= an--0033
         (671 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81131-4|CAD01083.1|  415|Caenorhabditis elegans Hypothetical pr...    32   0.32 
U23484-5|AAK93844.1|  590|Caenorhabditis elegans Hypothetical pr...    32   0.32 
Z74038-2|CAE48502.1|  611|Caenorhabditis elegans Hypothetical pr...    31   0.99 
U50197-7|AAM54189.1|  796|Caenorhabditis elegans Abnormal dauer ...    29   3.0  
U50197-6|AAK68348.1|  892|Caenorhabditis elegans Abnormal dauer ...    29   3.0  
U50197-5|AAM54188.1|  864|Caenorhabditis elegans Abnormal dauer ...    29   3.0  
AF005205-1|AAB61748.1|  796|Caenorhabditis elegans DAF-3 protein.      29   3.0  
Z81495-7|CAB04060.1|  444|Caenorhabditis elegans Hypothetical pr...    29   4.0  
AF043698-2|AAB97559.3|  700|Caenorhabditis elegans Hypothetical ...    28   5.3  
AC024775-3|AAK68454.1|  580|Caenorhabditis elegans Hypothetical ...    28   5.3  
U41010-3|AAF98587.1|  655|Caenorhabditis elegans Hypothetical pr...    28   6.9  
Z93394-5|CAB61035.1|  447|Caenorhabditis elegans Hypothetical pr...    27   9.2  
AL132948-1|CAC51077.1|  735|Caenorhabditis elegans Hypothetical ...    27   9.2  
AL117203-23|CAB61044.1|  447|Caenorhabditis elegans Hypothetical...    27   9.2  

>Z81131-4|CAD01083.1|  415|Caenorhabditis elegans Hypothetical
           protein T24D1.5 protein.
          Length = 415

 Score = 32.3 bits (70), Expect = 0.32
 Identities = 12/30 (40%), Positives = 17/30 (56%)
 Frame = -1

Query: 344 DPPSFHRCWRLTSPSCSFYHSHHYATSPSC 255
           +P   +RC ++   S    H HH+A SPSC
Sbjct: 356 EPQGCNRCQQIIGCSACIVHWHHHALSPSC 385


>U23484-5|AAK93844.1|  590|Caenorhabditis elegans Hypothetical
           protein EEED8.16 protein.
          Length = 590

 Score = 32.3 bits (70), Expect = 0.32
 Identities = 18/57 (31%), Positives = 28/57 (49%), Gaps = 1/57 (1%)
 Frame = +2

Query: 155 YAESIAPSHHSTYAHYYDDEEDGWEMPNFYNETYMKERLHNGVNGKMNSLAR-SNAS 322
           YAE  A  H    +H Y  +  G  + ++  + Y+   + NG +GK+    R SNAS
Sbjct: 333 YAEQHAQRHWELTSHTYSLKVGGERVWDYAGDNYVHRLIENGADGKLVEYQRESNAS 389


>Z74038-2|CAE48502.1|  611|Caenorhabditis elegans Hypothetical
           protein F58B4.1b protein.
          Length = 611

 Score = 30.7 bits (66), Expect = 0.99
 Identities = 23/67 (34%), Positives = 28/67 (41%), Gaps = 7/67 (10%)
 Frame = -1

Query: 419 PYALHRRYQSS---LSY----PGPRVSSTYRKDPPSFHRCWRLTSPSCSFYHSHHYATSP 261
           P  L  RY S+   L Y    P   VS+TY    P  + C  L  P+C FY       S 
Sbjct: 493 PIILFNRYASTKAVLEYRAVTPSVDVSATYTTFAPIVNSCQDL-HPNCDFYKFFGMCRSK 551

Query: 260 SCKSRCK 240
             +S CK
Sbjct: 552 KIRSNCK 558


>U50197-7|AAM54189.1|  796|Caenorhabditis elegans Abnormal dauer
           formation protein3, isoform c protein.
          Length = 796

 Score = 29.1 bits (62), Expect = 3.0
 Identities = 17/57 (29%), Positives = 29/57 (50%), Gaps = 7/57 (12%)
 Frame = -1

Query: 422 HPYALHRRYQSSLSY-PGPRVSSTYRKDPPSFHRCWRLTSPSCS------FYHSHHY 273
           HPY++  +    L+  P P++    +  PP  H+ + +  PSCS      F+ +HHY
Sbjct: 330 HPYSIAPQTHYPLNMNPIPQMPQMPQMPPP-LHQGYGMNGPSCSSENNNPFHQNHHY 385


>U50197-6|AAK68348.1|  892|Caenorhabditis elegans Abnormal dauer
           formation protein3, isoform a protein.
          Length = 892

 Score = 29.1 bits (62), Expect = 3.0
 Identities = 17/57 (29%), Positives = 29/57 (50%), Gaps = 7/57 (12%)
 Frame = -1

Query: 422 HPYALHRRYQSSLSY-PGPRVSSTYRKDPPSFHRCWRLTSPSCS------FYHSHHY 273
           HPY++  +    L+  P P++    +  PP  H+ + +  PSCS      F+ +HHY
Sbjct: 426 HPYSIAPQTHYPLNMNPIPQMPQMPQMPPP-LHQGYGMNGPSCSSENNNPFHQNHHY 481


>U50197-5|AAM54188.1|  864|Caenorhabditis elegans Abnormal dauer
           formation protein3, isoform b protein.
          Length = 864

 Score = 29.1 bits (62), Expect = 3.0
 Identities = 17/57 (29%), Positives = 29/57 (50%), Gaps = 7/57 (12%)
 Frame = -1

Query: 422 HPYALHRRYQSSLSY-PGPRVSSTYRKDPPSFHRCWRLTSPSCS------FYHSHHY 273
           HPY++  +    L+  P P++    +  PP  H+ + +  PSCS      F+ +HHY
Sbjct: 398 HPYSIAPQTHYPLNMNPIPQMPQMPQMPPP-LHQGYGMNGPSCSSENNNPFHQNHHY 453


>AF005205-1|AAB61748.1|  796|Caenorhabditis elegans DAF-3 protein.
          Length = 796

 Score = 29.1 bits (62), Expect = 3.0
 Identities = 17/57 (29%), Positives = 29/57 (50%), Gaps = 7/57 (12%)
 Frame = -1

Query: 422 HPYALHRRYQSSLSY-PGPRVSSTYRKDPPSFHRCWRLTSPSCS------FYHSHHY 273
           HPY++  +    L+  P P++    +  PP  H+ + +  PSCS      F+ +HHY
Sbjct: 330 HPYSIAPQTHYPLNMNPIPQMPQMPQMPPP-LHQGYGMNGPSCSSENNNPFHQNHHY 385


>Z81495-7|CAB04060.1|  444|Caenorhabditis elegans Hypothetical
           protein F08G2.7 protein.
          Length = 444

 Score = 28.7 bits (61), Expect = 4.0
 Identities = 15/54 (27%), Positives = 26/54 (48%)
 Frame = +2

Query: 185 STYAHYYDDEEDGWEMPNFYNETYMKERLHNGVNGKMNSLARSNASIYGTKEDL 346
           S+ + ++DD+ED  E  NF +E     R H   +   N    +  S + +K +L
Sbjct: 364 SSSSFFHDDDEDQDETKNFRDEEIESPRCHGSTSTLKNDEEAAELSDFLSKSNL 417


>AF043698-2|AAB97559.3|  700|Caenorhabditis elegans Hypothetical
           protein C54G6.2 protein.
          Length = 700

 Score = 28.3 bits (60), Expect = 5.3
 Identities = 13/40 (32%), Positives = 22/40 (55%)
 Frame = +2

Query: 110 QNGSQVNFYYGAHTPYAESIAPSHHSTYAHYYDDEEDGWE 229
           ++ ++ + Y+    P   S AP+HH   A Y  DEED ++
Sbjct: 86  RSSTEAHRYHPPRQP--RSSAPTHHRVPADYPSDEEDDYD 123


>AC024775-3|AAK68454.1|  580|Caenorhabditis elegans Hypothetical
           protein Y41D4A.4 protein.
          Length = 580

 Score = 28.3 bits (60), Expect = 5.3
 Identities = 13/54 (24%), Positives = 26/54 (48%)
 Frame = +2

Query: 14  IFIIFLVLLVWMICARSTKRKEPKKTLTPAIDQNGSQVNFYYGAHTPYAESIAP 175
           + ++FLV LVWMI  R+ ++   +     ++D   + +   YG    + +   P
Sbjct: 222 MMVVFLVGLVWMILVRTLRKDYARYQKEDSLDDLDADLGDEYGWKQVHGDVFRP 275


>U41010-3|AAF98587.1|  655|Caenorhabditis elegans Hypothetical
           protein T05A12.3 protein.
          Length = 655

 Score = 27.9 bits (59), Expect = 6.9
 Identities = 29/116 (25%), Positives = 46/116 (39%)
 Frame = +2

Query: 68  KRKEPKKTLTPAIDQNGSQVNFYYGAHTPYAESIAPSHHSTYAHYYDDEEDGWEMPNFYN 247
           K ++ KK +    D  G   +FY G      E +           YDDE+D  +M +F +
Sbjct: 527 KERKKKKAMNRERDSRGGGGSFYKGGDDYSDEEMDEDE-------YDDEDDFSDMDDFID 579

Query: 248 ETYMKERLHNGVNGKMNSLARSNASIYGTKEDLYDRWKRHADPGKKEKTDSDGEGH 415
           +T M       ++G           +   K D  D+W R      +EKT S+ + H
Sbjct: 580 DTEM------NMDGMCRKDFEDTLRMVNRKYDT-DKWSR------REKTISERDMH 622


>Z93394-5|CAB61035.1|  447|Caenorhabditis elegans Hypothetical
           protein Y48E1C.1a protein.
          Length = 447

 Score = 27.5 bits (58), Expect = 9.2
 Identities = 13/34 (38%), Positives = 20/34 (58%)
 Frame = +2

Query: 206 DDEEDGWEMPNFYNETYMKERLHNGVNGKMNSLA 307
           DDE++ WE  +F +E  +K  L  GV    +S+A
Sbjct: 22  DDEKNAWEEGDFIDEKELKGALQLGVLKTADSVA 55


>AL132948-1|CAC51077.1|  735|Caenorhabditis elegans Hypothetical
           protein Y39B6A.1 protein.
          Length = 735

 Score = 27.5 bits (58), Expect = 9.2
 Identities = 9/29 (31%), Positives = 17/29 (58%)
 Frame = +2

Query: 119 SQVNFYYGAHTPYAESIAPSHHSTYAHYY 205
           S ++ ++G HT +A    P HH  + H++
Sbjct: 72  SFISPHHGHHTHHAHGAHPGHHEVHHHHH 100


>AL117203-23|CAB61044.1|  447|Caenorhabditis elegans Hypothetical
           protein Y48E1C.1a protein.
          Length = 447

 Score = 27.5 bits (58), Expect = 9.2
 Identities = 13/34 (38%), Positives = 20/34 (58%)
 Frame = +2

Query: 206 DDEEDGWEMPNFYNETYMKERLHNGVNGKMNSLA 307
           DDE++ WE  +F +E  +K  L  GV    +S+A
Sbjct: 22  DDEKNAWEEGDFIDEKELKGALQLGVLKTADSVA 55


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,143,484
Number of Sequences: 27780
Number of extensions: 312880
Number of successful extensions: 1087
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 1023
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1087
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1518563232
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)