Silkworm BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= an--0020
         (602 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U53337-6|AAA96188.2|  510|Caenorhabditis elegans Acetylcholine r...    29   3.4  
U64852-2|ABH03524.1|  975|Caenorhabditis elegans Uncoordinated p...    28   4.5  
U64852-1|AAB04966.2| 1041|Caenorhabditis elegans Uncoordinated p...    28   4.5  
AF338767-1|AAL15621.1| 1041|Caenorhabditis elegans UNC-83 protein.     28   4.5  
AL110478-11|CAB54347.2| 1435|Caenorhabditis elegans Hypothetical...    27   7.8  
AC006655-1|AAF39875.1|  391|Caenorhabditis elegans Serpentine re...    27   7.8  

>U53337-6|AAA96188.2|  510|Caenorhabditis elegans Acetylcholine
           receptor protein 10 protein.
          Length = 510

 Score = 28.7 bits (61), Expect = 3.4
 Identities = 11/26 (42%), Positives = 16/26 (61%)
 Frame = +2

Query: 59  TLYTNKHLNIVIRQLAKVHMYPVIYK 136
           T +T   LN   RQ+  +HM+P+ YK
Sbjct: 259 TAFTITVLNFRYRQVQNIHMHPIFYK 284


>U64852-2|ABH03524.1|  975|Caenorhabditis elegans Uncoordinated
           protein 83, isoform b protein.
          Length = 975

 Score = 28.3 bits (60), Expect = 4.5
 Identities = 16/50 (32%), Positives = 26/50 (52%), Gaps = 1/50 (2%)
 Frame = -2

Query: 583 SILSTFEENFESLIDNLTDADSLTSSTETE-VFKSVGDSDSACSDESGYS 437
           ++L   E  +ES++D     DS TSS+E + V +S      +   + GYS
Sbjct: 223 NVLPFAENEYESIMDGRVTVDSCTSSSEDQMVEQSTNKKWESVLQDVGYS 272


>U64852-1|AAB04966.2| 1041|Caenorhabditis elegans Uncoordinated
           protein 83, isoform a protein.
          Length = 1041

 Score = 28.3 bits (60), Expect = 4.5
 Identities = 16/50 (32%), Positives = 26/50 (52%), Gaps = 1/50 (2%)
 Frame = -2

Query: 583 SILSTFEENFESLIDNLTDADSLTSSTETE-VFKSVGDSDSACSDESGYS 437
           ++L   E  +ES++D     DS TSS+E + V +S      +   + GYS
Sbjct: 289 NVLPFAENEYESIMDGRVTVDSCTSSSEDQMVEQSTNKKWESVLQDVGYS 338


>AF338767-1|AAL15621.1| 1041|Caenorhabditis elegans UNC-83 protein.
          Length = 1041

 Score = 28.3 bits (60), Expect = 4.5
 Identities = 16/50 (32%), Positives = 26/50 (52%), Gaps = 1/50 (2%)
 Frame = -2

Query: 583 SILSTFEENFESLIDNLTDADSLTSSTETE-VFKSVGDSDSACSDESGYS 437
           ++L   E  +ES++D     DS TSS+E + V +S      +   + GYS
Sbjct: 289 NVLPFAENEYESIMDGRVTVDSCTSSSEDQMVEQSTNKKWESVLQDVGYS 338


>AL110478-11|CAB54347.2| 1435|Caenorhabditis elegans Hypothetical
            protein Y26D4A.9 protein.
          Length = 1435

 Score = 27.5 bits (58), Expect = 7.8
 Identities = 16/40 (40%), Positives = 20/40 (50%), Gaps = 5/40 (12%)
 Frame = +3

Query: 168  CPAQTVLRTVN-----LPNKTSYRIHYL*LKHRIYNAKVV 272
            CP   ++ T N     L NKT Y IHY  LK  + N  V+
Sbjct: 1090 CPENKLVGTTNKLISDLSNKTKYVIHYKNLKQVLKNGMVL 1129


>AC006655-1|AAF39875.1|  391|Caenorhabditis elegans Serpentine
           receptor, class w protein6 protein.
          Length = 391

 Score = 27.5 bits (58), Expect = 7.8
 Identities = 12/37 (32%), Positives = 19/37 (51%)
 Frame = +2

Query: 395 NSVPNNAFLSIQELGVA*FITAGAVAVTHTLEHFSFG 505
           N  PNN    +  + ++ F +  A  +  T+EHF FG
Sbjct: 269 NDKPNNTSSFVIAMAISTFASEFAYGLVFTVEHFIFG 305


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,410,882
Number of Sequences: 27780
Number of extensions: 245534
Number of successful extensions: 569
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 558
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 569
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1289949676
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)