Silkworm BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= an--0004
         (595 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC090999-24|AAK26151.1|  502|Caenorhabditis elegans Hypothetical...    29   3.3  
Z81066-1|CAB02970.1|  919|Caenorhabditis elegans Hypothetical pr...    28   4.4  
AF077533-3|AAC64626.1| 1023|Caenorhabditis elegans Hypothetical ...    28   5.8  

>AC090999-24|AAK26151.1|  502|Caenorhabditis elegans Hypothetical
           protein Y82E9BR.1 protein.
          Length = 502

 Score = 28.7 bits (61), Expect = 3.3
 Identities = 14/33 (42%), Positives = 18/33 (54%)
 Frame = +2

Query: 374 KHRTACLERLSTYNGKKIILATKQLKDWFVNKW 472
           K R ACLER    NG +I  +   LK W + K+
Sbjct: 433 KSRGACLERFKVENGGQISCSQCDLKFWEILKF 465


>Z81066-1|CAB02970.1|  919|Caenorhabditis elegans Hypothetical
           protein F17B5.2 protein.
          Length = 919

 Score = 28.3 bits (60), Expect = 4.4
 Identities = 24/91 (26%), Positives = 37/91 (40%), Gaps = 11/91 (12%)
 Frame = -2

Query: 318 IINFIKFIWWYTHTK--NITLL---------IIINDTDSQICFHRIISSNKPIKAGNITY 172
           +I+F  F  WY H    NI +L         I+IN  D     H   +SN+ I   N+T 
Sbjct: 345 VISFEGFEKWYLHLSLTNIGVLVVTLFLLNVIVINKDDILDRVHLRTNSNRDIVTSNMTV 404

Query: 171 D*FVRFSWHFANLAHANLFFNEANITNRLNS 79
           D  +R ++ +    + N +          NS
Sbjct: 405 DDAIRLNYQWTVRDYVNFYTPTCKYAGTKNS 435


>AF077533-3|AAC64626.1| 1023|Caenorhabditis elegans Hypothetical
           protein F54G2.2 protein.
          Length = 1023

 Score = 27.9 bits (59), Expect = 5.8
 Identities = 20/52 (38%), Positives = 28/52 (53%), Gaps = 1/52 (1%)
 Frame = +2

Query: 380 RTACLERLSTYNGKKIILATKQLKDWFV-NKWCEFIYIRQTNHTKAFLLANI 532
           RTA LE + T    K I +  +L+D+FV N   E+    +   TK FL AN+
Sbjct: 120 RTAMLEEMLTVLMSKQIRSVSELEDYFVENNNLEY----ELTETKNFLQANM 167


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,970,717
Number of Sequences: 27780
Number of extensions: 266777
Number of successful extensions: 594
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 581
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 594
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1258229602
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)