Silkworm BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0038
         (680 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z83238-3|CAB05794.1|  329|Caenorhabditis elegans Hypothetical pr...    29   3.1  
Z92834-8|CAB07394.2| 1589|Caenorhabditis elegans Hypothetical pr...    29   4.1  
Z92834-7|CAB07385.2| 1587|Caenorhabditis elegans Hypothetical pr...    29   4.1  
Z49068-1|CAA88854.2|  499|Caenorhabditis elegans Hypothetical pr...    29   4.1  
U33051-1|AAA85507.1| 1587|Caenorhabditis elegans sur-2 protein.        29   4.1  
AL132904-10|CAC35843.2| 1481|Caenorhabditis elegans Hypothetical...    29   4.1  
U42848-2|AAA83608.2|  315|Caenorhabditis elegans Hypothetical pr...    27   9.4  

>Z83238-3|CAB05794.1|  329|Caenorhabditis elegans Hypothetical
           protein T08G3.3 protein.
          Length = 329

 Score = 29.1 bits (62), Expect = 3.1
 Identities = 14/33 (42%), Positives = 18/33 (54%)
 Frame = -1

Query: 536 NFIHHTKTDQLPTAREQSDQHRKRCISVRRPLV 438
           NFI+ TKT  L T+  Q    +  CI +  PLV
Sbjct: 221 NFIYRTKTMSLHTSNLQKKFFKSLCIQIAVPLV 253


>Z92834-8|CAB07394.2| 1589|Caenorhabditis elegans Hypothetical protein
            F39B2.4b protein.
          Length = 1589

 Score = 28.7 bits (61), Expect = 4.1
 Identities = 15/40 (37%), Positives = 23/40 (57%), Gaps = 1/40 (2%)
 Frame = -1

Query: 587  HHCLPPLPRQHWSFEPDNFIHHTKTDQ-LPTAREQSDQHR 471
            H  +PP P+QH S    +  HHT T Q + T++ Q+ Q +
Sbjct: 1437 HQMMPP-PQQHSSSLQHHLQHHTSTHQMMDTSQHQTIQQQ 1475


>Z92834-7|CAB07385.2| 1587|Caenorhabditis elegans Hypothetical protein
            F39B2.4a protein.
          Length = 1587

 Score = 28.7 bits (61), Expect = 4.1
 Identities = 15/40 (37%), Positives = 23/40 (57%), Gaps = 1/40 (2%)
 Frame = -1

Query: 587  HHCLPPLPRQHWSFEPDNFIHHTKTDQ-LPTAREQSDQHR 471
            H  +PP P+QH S    +  HHT T Q + T++ Q+ Q +
Sbjct: 1435 HQMMPP-PQQHSSSLQHHLQHHTSTHQMMDTSQHQTIQQQ 1473


>Z49068-1|CAA88854.2|  499|Caenorhabditis elegans Hypothetical
           protein K01C8.1 protein.
          Length = 499

 Score = 28.7 bits (61), Expect = 4.1
 Identities = 11/30 (36%), Positives = 20/30 (66%)
 Frame = +1

Query: 379 RLESADRTLLAQVSSEDGKETSGRLTEIHR 468
           R++ A+R   A +S EDG E + R+ ++H+
Sbjct: 29  RVKQAERKRTASISKEDGMEYNKRVRKLHK 58


>U33051-1|AAA85507.1| 1587|Caenorhabditis elegans sur-2 protein.
          Length = 1587

 Score = 28.7 bits (61), Expect = 4.1
 Identities = 15/40 (37%), Positives = 23/40 (57%), Gaps = 1/40 (2%)
 Frame = -1

Query: 587  HHCLPPLPRQHWSFEPDNFIHHTKTDQ-LPTAREQSDQHR 471
            H  +PP P+QH S    +  HHT T Q + T++ Q+ Q +
Sbjct: 1435 HQMMPP-PQQHSSSLQHHLQHHTSTHQMMDTSQHQTIQQQ 1473


>AL132904-10|CAC35843.2| 1481|Caenorhabditis elegans Hypothetical
            protein Y111B2A.14 protein.
          Length = 1481

 Score = 28.7 bits (61), Expect = 4.1
 Identities = 11/33 (33%), Positives = 19/33 (57%)
 Frame = -1

Query: 572  PLPRQHWSFEPDNFIHHTKTDQLPTAREQSDQH 474
            P P QH++F P +    ++  Q+P  R+ S Q+
Sbjct: 1395 PSPLQHFNFSPHSSSFSSQRPQMPPQRQMSQQN 1427


>U42848-2|AAA83608.2|  315|Caenorhabditis elegans Hypothetical
           protein C31H1.5 protein.
          Length = 315

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 14/38 (36%), Positives = 21/38 (55%)
 Frame = -1

Query: 524 HTKTDQLPTAREQSDQHRKRCISVRRPLVSFPSSLLTC 411
           H  T+Q  TA  + ++  K C+  R+PL+S   S L C
Sbjct: 146 HPATNQ--TANREYNRLYKSCLGFRKPLISCAYSHLVC 181


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,890,255
Number of Sequences: 27780
Number of extensions: 305848
Number of successful extensions: 784
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 764
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 784
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1550199966
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)