Silkworm BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0028
         (447 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF098505-1|AAC67415.1|  536|Caenorhabditis elegans Hypothetical ...    95   2e-20
U41544-2|AAA83184.1|  436|Caenorhabditis elegans Dehydrogenases,...    33   0.095
Z74029-1|CAA98431.1|  293|Caenorhabditis elegans Hypothetical pr...    31   0.38 
U42835-6|AAA83589.2|  816|Caenorhabditis elegans Dehydrogenases,...    29   1.2  
U58761-4|AAB00715.1|  631|Caenorhabditis elegans Hypothetical pr...    29   1.5  
Z78415-6|CAH60758.1|  291|Caenorhabditis elegans Hypothetical pr...    29   2.0  
AC084154-10|AAK29873.1| 1140|Caenorhabditis elegans Hypothetical...    29   2.0  
Z37092-2|CAA85453.1|  555|Caenorhabditis elegans Hypothetical pr...    28   2.7  
AL034393-5|CAA22311.1|  362|Caenorhabditis elegans Hypothetical ...    28   3.6  
AF159950-1|AAD45354.1|  362|Caenorhabditis elegans GSK-3 protein.      28   3.6  
AL032630-6|CAA21562.1|  181|Caenorhabditis elegans Hypothetical ...    27   4.7  
U97005-10|AAK72084.1|  646|Caenorhabditis elegans Hypothetical p...    27   6.2  
AL117207-18|CAB60405.3|  384|Caenorhabditis elegans Hypothetical...    27   8.2  

>AF098505-1|AAC67415.1|  536|Caenorhabditis elegans Hypothetical
           protein Y71H10A.2 protein.
          Length = 536

 Score = 95.1 bits (226), Expect = 2e-20
 Identities = 44/95 (46%), Positives = 62/95 (65%)
 Frame = +1

Query: 148 TVREFYDGKSVFITGATGFLGKAYVEKLAYSCPGIVSIYILIRDKKGSNTEERMRKYLDQ 327
           +VR+ Y G SV +TG TGFLGK  VEKL ++   I +IY++IR +KG N +ER+   L  
Sbjct: 4   SVRDVYAGSSVLLTGGTGFLGKVIVEKLLWTIDDIQNIYLMIRTRKGKNPQERLSGLLHD 63

Query: 328 PIFSRIKYEHPEYFKKIIPISGDITAPKLGLCDEE 432
           P+F+RI+ E PE F K+  I GD+    LG+  E+
Sbjct: 64  PLFNRIRQEKPEAFDKLKAIGGDMMVENLGMDPED 98


>U41544-2|AAA83184.1|  436|Caenorhabditis elegans Dehydrogenases,
           short chain protein28 protein.
          Length = 436

 Score = 33.1 bits (72), Expect = 0.095
 Identities = 27/84 (32%), Positives = 41/84 (48%), Gaps = 6/84 (7%)
 Frame = +1

Query: 163 YDGKSVFITGATGFLGKAYVEKLA-YSCPGIVSIYILIRDKKGSNTEERMRKYLDQPIFS 339
           +DGK   +TGA G LGK Y  +LA   C  +V+   L  D+ G+++   M   + Q I S
Sbjct: 5   FDGKVAIVTGAGGGLGKTYALELAKRGCKVVVN--DLGGDRHGTSSSSSMADKVVQEIKS 62

Query: 340 R-----IKYEHPEYFKKIIPISGD 396
                   Y+  E+  KI+  + D
Sbjct: 63  AGGQAVANYDSVEFGDKIVKTAID 86


>Z74029-1|CAA98431.1|  293|Caenorhabditis elegans Hypothetical
           protein C45B11.3 protein.
          Length = 293

 Score = 31.1 bits (67), Expect = 0.38
 Identities = 16/32 (50%), Positives = 20/32 (62%)
 Frame = +1

Query: 160 FYDGKSVFITGATGFLGKAYVEKLAYSCPGIV 255
           F+ GK+VFITGA+  +GK    KLA     IV
Sbjct: 10  FFAGKTVFITGASRGIGKEIALKLAKDGANIV 41


>U42835-6|AAA83589.2|  816|Caenorhabditis elegans Dehydrogenases,
           short chain protein27 protein.
          Length = 816

 Score = 29.5 bits (63), Expect = 1.2
 Identities = 16/43 (37%), Positives = 27/43 (62%), Gaps = 1/43 (2%)
 Frame = +1

Query: 184 ITGATGFLGKAYVEKLAYSCPGIVSIYILIRD-KKGSNTEERM 309
           ITG T  +GKAY+E+L     G+   Y++ R+  K +NT++ +
Sbjct: 508 ITGGTDGIGKAYIEELC-KTRGLKKFYLIGRNIDKLNNTKKEL 549


>U58761-4|AAB00715.1|  631|Caenorhabditis elegans Hypothetical
           protein C01F1.3a protein.
          Length = 631

 Score = 29.1 bits (62), Expect = 1.5
 Identities = 18/52 (34%), Positives = 26/52 (50%), Gaps = 2/52 (3%)
 Frame = +1

Query: 163 YDGKSVFITGATGFLGKAYVEKL--AYSCPGIVSIYILIRDKKGSNTEERMR 312
           Y  K+V ITG  GF+G  +V  +  A+     V+I  LI +    N  E +R
Sbjct: 3   YTPKNVVITGGCGFIGSNFVNYIHDAWPTCNFVNIDKLILNSDTQNVAESVR 54


>Z78415-6|CAH60758.1|  291|Caenorhabditis elegans Hypothetical
           protein C17G1.8 protein.
          Length = 291

 Score = 28.7 bits (61), Expect = 2.0
 Identities = 15/38 (39%), Positives = 23/38 (60%), Gaps = 1/38 (2%)
 Frame = +1

Query: 163 YDGKSVFITGATGFLGKAYVEK-LAYSCPGIVSIYILI 273
           + G ++FI  A G+LG ++  K L YS  G V + IL+
Sbjct: 54  FTGVTIFIIVAVGYLGVSWSNKSLLYSYIGFVILLILV 91


>AC084154-10|AAK29873.1| 1140|Caenorhabditis elegans Hypothetical
           protein Y22D7AR.2 protein.
          Length = 1140

 Score = 28.7 bits (61), Expect = 2.0
 Identities = 19/67 (28%), Positives = 35/67 (52%), Gaps = 1/67 (1%)
 Frame = +1

Query: 103 ISKMSHNGTLDEHYQTVREFYDGKSVFITGATGFL-GKAYVEKLAYSCPGIVSIYILIRD 279
           I+K + N TLD   + + + +   S F+ G  GFL G A+++ +      +  +  +IR 
Sbjct: 633 IAKATEN-TLDRFQKKIEKDFGEISTFVNGLQGFLDGFAFLKNI-QGIDSLKPVIEVIRS 690

Query: 280 KKGSNTE 300
            + SNT+
Sbjct: 691 YRDSNTK 697


>Z37092-2|CAA85453.1|  555|Caenorhabditis elegans Hypothetical
           protein F44F4.2 protein.
          Length = 555

 Score = 28.3 bits (60), Expect = 2.7
 Identities = 9/21 (42%), Positives = 14/21 (66%)
 Frame = -3

Query: 445 LIYFFLHRTILVWVR*YHQRW 383
           L+Y F++R IL W+  Y  +W
Sbjct: 502 LLYLFIYRVILRWIEPYVNKW 522


>AL034393-5|CAA22311.1|  362|Caenorhabditis elegans Hypothetical
           protein Y18D10A.5 protein.
          Length = 362

 Score = 27.9 bits (59), Expect = 3.6
 Identities = 17/64 (26%), Positives = 35/64 (54%)
 Frame = +1

Query: 160 FYDGKSVFITGATGFLGKAYVEKLAYSCPGIVSIYILIRDKKGSNTEERMRKYLDQPIFS 339
           +YD K +      G  G  ++ KL+ +   +V+I  +++DK+  N E ++ + L+ P   
Sbjct: 36  YYDQKVI----GNGSFGVVFLAKLS-TTNEMVAIKKVLQDKRFKNRELQIMRKLNHPNIV 90

Query: 340 RIKY 351
           ++KY
Sbjct: 91  KLKY 94


>AF159950-1|AAD45354.1|  362|Caenorhabditis elegans GSK-3 protein.
          Length = 362

 Score = 27.9 bits (59), Expect = 3.6
 Identities = 17/64 (26%), Positives = 35/64 (54%)
 Frame = +1

Query: 160 FYDGKSVFITGATGFLGKAYVEKLAYSCPGIVSIYILIRDKKGSNTEERMRKYLDQPIFS 339
           +YD K +      G  G  ++ KL+ +   +V+I  +++DK+  N E ++ + L+ P   
Sbjct: 36  YYDQKVI----GNGSFGVVFLAKLS-TTNEMVAIKKVLQDKRFKNRELQIMRKLNHPNIV 90

Query: 340 RIKY 351
           ++KY
Sbjct: 91  KLKY 94


>AL032630-6|CAA21562.1|  181|Caenorhabditis elegans Hypothetical
           protein Y62H9A.6 protein.
          Length = 181

 Score = 27.5 bits (58), Expect = 4.7
 Identities = 13/32 (40%), Positives = 15/32 (46%)
 Frame = +1

Query: 208 GKAYVEKLAYSCPGIVSIYILIRDKKGSNTEE 303
           GK Y      SCP     Y +I DK GSN  +
Sbjct: 98  GKTYT---TISCPSNTKTYAIIADKSGSNVSQ 126


>U97005-10|AAK72084.1|  646|Caenorhabditis elegans Hypothetical
           protein F19F10.12 protein.
          Length = 646

 Score = 27.1 bits (57), Expect = 6.2
 Identities = 17/48 (35%), Positives = 24/48 (50%)
 Frame = +1

Query: 94  FRVISKMSHNGTLDEHYQTVREFYDGKSVFITGATGFLGKAYVEKLAY 237
           F V + M    T+D    +  E + G   F T  +GF GK YV ++AY
Sbjct: 78  FHVSTDMLKMDTIDAILVSNYESFVGLP-FYTEGSGFSGKIYVTEIAY 124


>AL117207-18|CAB60405.3|  384|Caenorhabditis elegans Hypothetical
           protein Y60A3A.10 protein.
          Length = 384

 Score = 26.6 bits (56), Expect = 8.2
 Identities = 11/22 (50%), Positives = 16/22 (72%)
 Frame = +1

Query: 169 GKSVFITGATGFLGKAYVEKLA 234
           GK+  +TGAT  +G+A  E+LA
Sbjct: 48  GKTYIVTGATSGIGQATAEELA 69


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,466,475
Number of Sequences: 27780
Number of extensions: 214162
Number of successful extensions: 618
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 617
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 618
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 777938954
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)