Silkworm BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0026
         (343 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U41994-7|AAY55868.1|  155|Caenorhabditis elegans Hypothetical pr...    28   1.5  
AF068716-8|AAC17749.1|  554|Caenorhabditis elegans Innexin prote...    27   2.7  
U80451-2|AAB37837.1|  223|Caenorhabditis elegans Hypothetical pr...    27   4.7  
Z11115-10|CAA77459.1|  503|Caenorhabditis elegans Hypothetical p...    26   8.1  

>U41994-7|AAY55868.1|  155|Caenorhabditis elegans Hypothetical
           protein F59A6.10 protein.
          Length = 155

 Score = 28.3 bits (60), Expect = 1.5
 Identities = 16/44 (36%), Positives = 22/44 (50%), Gaps = 4/44 (9%)
 Frame = -3

Query: 137 GCCR-RCSICHWC*PR--PAVRSSCRGLRSCLVPNSCSP-GIHY 18
           GC R  CS    C  R  P +  SC+ + +C  PNS  P  ++Y
Sbjct: 59  GCARMECSAPKVCVERVRPCIGRSCKEIATCETPNSTFPLSVYY 102


>AF068716-8|AAC17749.1|  554|Caenorhabditis elegans Innexin protein
           4 protein.
          Length = 554

 Score = 27.5 bits (58), Expect = 2.7
 Identities = 11/19 (57%), Positives = 15/19 (78%)
 Frame = +2

Query: 107 SDISSSDGNNHQAVQRLLS 163
           +D S+SDG NHQ + R+LS
Sbjct: 448 NDSSNSDGQNHQRLGRILS 466


>U80451-2|AAB37837.1|  223|Caenorhabditis elegans Hypothetical
           protein F11G11.5 protein.
          Length = 223

 Score = 26.6 bits (56), Expect = 4.7
 Identities = 11/39 (28%), Positives = 19/39 (48%)
 Frame = -3

Query: 230 LPVPVSVQLTPLVARALRPSVRSKEASGRPGGCCRRCSI 114
           LP P +++      R   P+  +     +PG  CRRC++
Sbjct: 137 LPQPAAIEQIVRAVRIQNPAGSNVIVHVQPGAPCRRCTV 175


>Z11115-10|CAA77459.1|  503|Caenorhabditis elegans Hypothetical
           protein ZK637.10 protein.
          Length = 503

 Score = 25.8 bits (54), Expect = 8.1
 Identities = 10/26 (38%), Positives = 18/26 (69%)
 Frame = -1

Query: 82  EVLAEDYDRASCRIPAARGSTILERR 5
           ++LA+++DRASC    A G  + +R+
Sbjct: 318 KILADEFDRASCNGVYAVGDIVQDRQ 343


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,459,033
Number of Sequences: 27780
Number of extensions: 143810
Number of successful extensions: 364
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 348
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 364
length of database: 12,740,198
effective HSP length: 72
effective length of database: 10,740,038
effective search space used: 440341558
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)