Silkworm BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0017
         (575 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z92834-3|CAB07384.1|  328|Caenorhabditis elegans Hypothetical pr...    33   0.15 
AF040652-4|AAB95021.2|  736|Caenorhabditis elegans Hypothetical ...    29   3.1  
Z77663-7|CAB01206.1|  856|Caenorhabditis elegans Hypothetical pr...    28   5.5  
U41533-13|AAA83174.3|  955|Caenorhabditis elegans Hypothetical p...    28   5.5  
AF134186-1|AAD55361.1| 1359|Caenorhabditis elegans XNP-1 protein.      27   7.2  
AF000196-11|AAC24256.1| 1359|Caenorhabditis elegans Human xnp ge...    27   7.2  

>Z92834-3|CAB07384.1|  328|Caenorhabditis elegans Hypothetical
           protein F39B2.3 protein.
          Length = 328

 Score = 33.1 bits (72), Expect = 0.15
 Identities = 42/138 (30%), Positives = 62/138 (44%), Gaps = 7/138 (5%)
 Frame = +1

Query: 178 ELVEFVIPPLIDGEVLVK--AEWIS-VDPYLRA--YNSYQAVPYDQFSYQVGVVVQSRDS 342
           E VE  +P L   +VLV+  A  ++ VD Y+RA  Y     +PY       G V    +S
Sbjct: 25  EAVESDMPRLEKNQVLVRNYAAGVNPVDTYIRAGQYGKLPNLPYVPGKDGAGFVELVGES 84

Query: 343 --NYPVGTRVVAHKGWCDHYVFTPSTQPNTPKDRIYKLPDLQGLSPSLGVGAVGMPGATA 516
             N  VG RV     W        ST      +R ++LP+  G+S   G  ++G+P  TA
Sbjct: 85  VKNVKVGDRV-----WYGSEA--DSTAEYVAVNRPFELPE--GVSFEEGA-SLGVPYLTA 134

Query: 517 YFGFLEICKPKAGETVVV 570
           Y     +   K G+ ++V
Sbjct: 135 YRALFHLAGAKTGDVILV 152


>AF040652-4|AAB95021.2|  736|Caenorhabditis elegans Hypothetical
           protein T05A8.4 protein.
          Length = 736

 Score = 28.7 bits (61), Expect = 3.1
 Identities = 11/37 (29%), Positives = 23/37 (62%)
 Frame = +1

Query: 136 VKNHFKGVSKQEDYELVEFVIPPLIDGEVLVKAEWIS 246
           VKNHF   +KQ+  E++  ++   +D  +L+  +W++
Sbjct: 416 VKNHFDHEAKQQVEEMISLIMESFVD--LLLSEDWLT 450


>Z77663-7|CAB01206.1|  856|Caenorhabditis elegans Hypothetical
           protein F53F4.8 protein.
          Length = 856

 Score = 27.9 bits (59), Expect = 5.5
 Identities = 16/37 (43%), Positives = 19/37 (51%), Gaps = 2/37 (5%)
 Frame = -2

Query: 535 FLRNQNRQSRPASQPPLRP--ATATIPADLVVYKYDP 431
           F RN N    PA  P + P  A AT  A+L  Y+Y P
Sbjct: 574 FFRNHNTLGEPAQDPAVWPSVAAATKIANLFRYQYLP 610


>U41533-13|AAA83174.3|  955|Caenorhabditis elegans Hypothetical
           protein R05F9.12 protein.
          Length = 955

 Score = 27.9 bits (59), Expect = 5.5
 Identities = 16/37 (43%), Positives = 19/37 (51%), Gaps = 2/37 (5%)
 Frame = -2

Query: 535 FLRNQNRQSRPASQPPLRP--ATATIPADLVVYKYDP 431
           F RN N    PA  P + P  A AT  A+L  Y+Y P
Sbjct: 641 FFRNHNTIGAPAQDPAVWPSVAAATKKANLFRYQYLP 677


>AF134186-1|AAD55361.1| 1359|Caenorhabditis elegans XNP-1 protein.
          Length = 1359

 Score = 27.5 bits (58), Expect = 7.2
 Identities = 12/40 (30%), Positives = 20/40 (50%)
 Frame = +1

Query: 85  KTQGPTKVEMTSARKYVVKNHFKGVSKQEDYELVEFVIPP 204
           K   P +V     R +V+ +H K    ++DY ++   IPP
Sbjct: 707 KDASPLEVSFMKRRCHVLYDHLKKCVDRKDYRVLTEAIPP 746


>AF000196-11|AAC24256.1| 1359|Caenorhabditis elegans Human xnp gene
           related protein 1 protein.
          Length = 1359

 Score = 27.5 bits (58), Expect = 7.2
 Identities = 12/40 (30%), Positives = 20/40 (50%)
 Frame = +1

Query: 85  KTQGPTKVEMTSARKYVVKNHFKGVSKQEDYELVEFVIPP 204
           K   P +V     R +V+ +H K    ++DY ++   IPP
Sbjct: 707 KDASPLEVSFMKRRCHVLYDHLKKCVDRKDYRVLTEAIPP 746


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.317    0.135    0.413 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,401,819
Number of Sequences: 27780
Number of extensions: 285353
Number of successful extensions: 828
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 790
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 828
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1194789454
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)