Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV120017.Seq
(731 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AC024790-4|AAF60636.1| 121|Caenorhabditis elegans Hypothetical ... 37 0.017
AC024790-5|AAF60640.2| 119|Caenorhabditis elegans Hypothetical ... 36 0.039
Z83217-2|CAB05680.2| 319|Caenorhabditis elegans Hypothetical pr... 31 1.1
AC024853-4|AAK68586.1| 746|Caenorhabditis elegans Hypothetical ... 31 1.1
Z73907-1|CAA98124.1| 4753|Caenorhabditis elegans Hypothetical pr... 30 1.5
M96150-1|AAA28105.1| 4753|Caenorhabditis elegans LDL receptor-re... 30 1.5
AL032626-17|CAA21536.1| 282|Caenorhabditis elegans Hypothetical... 30 1.9
Z46791-5|CAA86755.2| 948|Caenorhabditis elegans Hypothetical pr... 29 3.4
Z81028-2|CAB02694.1| 996|Caenorhabditis elegans Hypothetical pr... 29 4.5
U40410-3|AAL27230.1| 1169|Caenorhabditis elegans Lin-12 and glp-... 29 4.5
U40410-2|AAL27229.1| 1876|Caenorhabditis elegans Lin-12 and glp-... 29 4.5
U18546-1|AAB02615.1| 996|Caenorhabditis elegans Na,K-ATPase alp... 29 4.5
AF003135-11|AAK18987.2| 1406|Caenorhabditis elegans Hypothetical... 29 4.5
AC024790-10|AAF60632.2| 129|Caenorhabditis elegans Hypothetical... 29 4.5
Z70034-10|CAI79119.2| 560|Caenorhabditis elegans Hypothetical p... 28 5.9
Z70034-3|CAA93860.2| 620|Caenorhabditis elegans Hypothetical pr... 28 5.9
Z70034-2|CAA93854.3| 623|Caenorhabditis elegans Hypothetical pr... 28 5.9
U56860-5|AAP40524.1| 685|Caenorhabditis elegans Intermediate fi... 28 5.9
U56860-4|AAM69100.1| 1128|Caenorhabditis elegans Intermediate fi... 28 5.9
U56860-3|AAM69101.1| 1248|Caenorhabditis elegans Intermediate fi... 28 5.9
U15406-1|AAA50456.1| 2272|Caenorhabditis elegans gag, pol and en... 28 5.9
L23646-13|AAA28035.2| 2175|Caenorhabditis elegans C. elegans RET... 28 5.9
L23646-12|AAL02516.1| 2186|Caenorhabditis elegans C. elegans RET... 28 5.9
AF067617-5|AAC17559.1| 2957|Caenorhabditis elegans Temporarily a... 28 5.9
Z81056-1|CAB02902.1| 319|Caenorhabditis elegans Hypothetical pr... 28 7.8
U80448-6|AAO12417.1| 687|Caenorhabditis elegans Hypothetical pr... 28 7.8
U80448-5|AAB37819.1| 975|Caenorhabditis elegans Hypothetical pr... 28 7.8
AC024824-3|AAK85501.1| 543|Caenorhabditis elegans Hypothetical ... 28 7.8
>AC024790-4|AAF60636.1| 121|Caenorhabditis elegans Hypothetical
protein Y47D7A.7 protein.
Length = 121
Score = 36.7 bits (81), Expect = 0.017
Identities = 24/70 (34%), Positives = 33/70 (47%), Gaps = 8/70 (11%)
Frame = +1
Query: 22 NFYYNTPPPPLRYPSNPATAIFTNAQTYNNAPGY--VPP------TTRDNKMDTSRSNST 177
N Y TP P PS P + A TY + P Y PP T+ DN+ DT ++T
Sbjct: 24 NSYPTTPSYPTPPPSYPTPKKYPVAPTYPSTPSYSAQPPPAPSAYTSSDNQEDTESESAT 83
Query: 178 NSVAIAPYNK 207
++ A + Y K
Sbjct: 84 SASATSEYRK 93
>AC024790-5|AAF60640.2| 119|Caenorhabditis elegans Hypothetical
protein Y47D7A.2 protein.
Length = 119
Score = 35.5 bits (78), Expect = 0.039
Identities = 22/68 (32%), Positives = 31/68 (45%), Gaps = 6/68 (8%)
Frame = +1
Query: 22 NFYYNTPPPPLRYPSNPATAIFTNAQTYNNAPGY-VPP-----TTRDNKMDTSRSNSTNS 183
N Y TP P PS P + A TY + P Y PP ++ DN+ DT + T +
Sbjct: 24 NSYPTTPSYPTPPPSYPTPKKYPVAPTYPSTPSYSAPPAQSAYSSSDNQEDTESESVTGA 83
Query: 184 VAIAPYNK 207
+ + Y K
Sbjct: 84 ASTSEYRK 91
>Z83217-2|CAB05680.2| 319|Caenorhabditis elegans Hypothetical
protein C10C6.3 protein.
Length = 319
Score = 30.7 bits (66), Expect = 1.1
Identities = 14/43 (32%), Positives = 21/43 (48%)
Frame = +1
Query: 88 TNAQTYNNAPGYVPPTTRDNKMDTSRSNSTNSVAIAPYNKSKE 216
TN T + GYVPP ++ + N+VA+ P K K+
Sbjct: 151 TNVYT-GSREGYVPPPAKEGSGSGGKKKDMNNVAVKPDEKKKD 192
>AC024853-4|AAK68586.1| 746|Caenorhabditis elegans Hypothetical
protein Y71F9AR.3 protein.
Length = 746
Score = 30.7 bits (66), Expect = 1.1
Identities = 18/51 (35%), Positives = 27/51 (52%), Gaps = 2/51 (3%)
Frame = +1
Query: 22 NFYYNTPP--PPLRYPSNPATAIFTNAQTYNNAPGYVPPTTRDNKMDTSRS 168
+F+ N P P R S P+++ F+N+ N PPTT D +TSR+
Sbjct: 184 DFFANELPSTPSEREASPPSSSQFSNSAAPNLPETKQPPTTTDQYSETSRT 234
>Z73907-1|CAA98124.1| 4753|Caenorhabditis elegans Hypothetical protein
F29D11.1 protein.
Length = 4753
Score = 30.3 bits (65), Expect = 1.5
Identities = 13/41 (31%), Positives = 24/41 (58%)
Frame = +1
Query: 34 NTPPPPLRYPSNPATAIFTNAQTYNNAPGYVPPTTRDNKMD 156
++PPP PS A+A+ N + + A +VPPT ++++
Sbjct: 4666 SSPPPSNDQPSTSASAMSPNRPSTSAASSFVPPTFDQDEIE 4706
>M96150-1|AAA28105.1| 4753|Caenorhabditis elegans LDL receptor-related
protein protein.
Length = 4753
Score = 30.3 bits (65), Expect = 1.5
Identities = 13/41 (31%), Positives = 24/41 (58%)
Frame = +1
Query: 34 NTPPPPLRYPSNPATAIFTNAQTYNNAPGYVPPTTRDNKMD 156
++PPP PS A+A+ N + + A +VPPT ++++
Sbjct: 4666 SSPPPSNDQPSTSASAMSPNRPSTSAASSFVPPTFDQDEIE 4706
>AL032626-17|CAA21536.1| 282|Caenorhabditis elegans Hypothetical
protein Y37D8A.21 protein.
Length = 282
Score = 29.9 bits (64), Expect = 1.9
Identities = 16/56 (28%), Positives = 24/56 (42%)
Frame = +3
Query: 81 HIHQRANLQQRARVRAAYDARQQNGHEPQQQHKLGSDRTVQQEQRTDARRRRIYLV 248
H + QQ R Y+ R QN + + G DR+ + R D RRR + +
Sbjct: 190 HFVNQMMQQQINRSAPPYNGRHQNSTPHRHHDRHGYDRSSSRHHRNDDRRRSAHFL 245
>Z46791-5|CAA86755.2| 948|Caenorhabditis elegans Hypothetical
protein C09G5.6 protein.
Length = 948
Score = 29.1 bits (62), Expect = 3.4
Identities = 17/61 (27%), Positives = 23/61 (37%)
Frame = +1
Query: 1 SMTDERGNFYYNTPPPPLRYPSNPATAIFTNAQTYNNAPGYVPPTTRDNKMDTSRSNSTN 180
S + R + Y PPP YP+NP Y P Y DN+ + S N
Sbjct: 187 SSPNNRTSLYNPQPPPKTGYPTNPRVPYNPPQPNYTRQPTY----PEDNRAPYKPTRSPN 242
Query: 181 S 183
+
Sbjct: 243 T 243
>Z81028-2|CAB02694.1| 996|Caenorhabditis elegans Hypothetical
protein B0365.3 protein.
Length = 996
Score = 28.7 bits (61), Expect = 4.5
Identities = 22/69 (31%), Positives = 30/69 (43%), Gaps = 2/69 (2%)
Frame = +2
Query: 392 KAV*IGGDHDTPPDSVAKRVGTRQRGRVPAERFEYISGIFVLNSLPAYAQKFYNGGADM- 568
K V + GDH ++AK VG G E GI V P A+ G+D+
Sbjct: 585 KVVMVTGDHPITAKAIAKSVGIISDGTETVEDIAIRRGIPVEEVNPREAKAAVIHGSDLR 644
Query: 569 -LGKDALAE 592
+ +D LAE
Sbjct: 645 EMSEDQLAE 653
>U40410-3|AAL27230.1| 1169|Caenorhabditis elegans Lin-12 and glp-1
x-hybridizingprotein 1, isoform b protein.
Length = 1169
Score = 28.7 bits (61), Expect = 4.5
Identities = 14/43 (32%), Positives = 19/43 (44%)
Frame = +1
Query: 25 FYYNTPPPPLRYPSNPATAIFTNAQTYNNAPGYVPPTTRDNKM 153
F+ T PP Y + PAT F Q Y P + + N+M
Sbjct: 389 FFQTTRPPMPTYATTPATTQFIPKQIYTTPPQMPKNSIKINQM 431
>U40410-2|AAL27229.1| 1876|Caenorhabditis elegans Lin-12 and glp-1
x-hybridizingprotein 1, isoform a protein.
Length = 1876
Score = 28.7 bits (61), Expect = 4.5
Identities = 14/43 (32%), Positives = 19/43 (44%)
Frame = +1
Query: 25 FYYNTPPPPLRYPSNPATAIFTNAQTYNNAPGYVPPTTRDNKM 153
F+ T PP Y + PAT F Q Y P + + N+M
Sbjct: 486 FFQTTRPPMPTYATTPATTQFIPKQIYTTPPQMPKNSIKINQM 528
>U18546-1|AAB02615.1| 996|Caenorhabditis elegans Na,K-ATPase alpha
subunit protein.
Length = 996
Score = 28.7 bits (61), Expect = 4.5
Identities = 22/69 (31%), Positives = 30/69 (43%), Gaps = 2/69 (2%)
Frame = +2
Query: 392 KAV*IGGDHDTPPDSVAKRVGTRQRGRVPAERFEYISGIFVLNSLPAYAQKFYNGGADM- 568
K V + GDH ++AK VG G E GI V P A+ G+D+
Sbjct: 585 KVVMVTGDHPITAKAIAKSVGIISDGTETVEDIAIRRGIPVEEVNPREAKAAVIHGSDLR 644
Query: 569 -LGKDALAE 592
+ +D LAE
Sbjct: 645 EMSEDQLAE 653
>AF003135-11|AAK18987.2| 1406|Caenorhabditis elegans Hypothetical
protein W03F11.4 protein.
Length = 1406
Score = 28.7 bits (61), Expect = 4.5
Identities = 13/42 (30%), Positives = 20/42 (47%)
Frame = +1
Query: 43 PPPLRYPSNPATAIFTNAQTYNNAPGYVPPTTRDNKMDTSRS 168
PPP P + A ++ NAP P TT ++ ++S S
Sbjct: 833 PPPAPQPPSSAASLTPAPSAAQNAPSIAPSTTEASEEESSGS 874
>AC024790-10|AAF60632.2| 129|Caenorhabditis elegans Hypothetical
protein Y47D7A.11 protein.
Length = 129
Score = 28.7 bits (61), Expect = 4.5
Identities = 17/54 (31%), Positives = 21/54 (38%), Gaps = 1/54 (1%)
Frame = +1
Query: 31 YNTPPPPLRYPSN-PATAIFTNAQTYNNAPGYVPPTTRDNKMDTSRSNSTNSVA 189
Y TPPP P P + + Y P Y P + +S S S N VA
Sbjct: 32 YPTPPPSYPTPKKYPVAPTYPSPPAYAQKPSYSAPPPPAPSVYSSSSFSDNEVA 85
>Z70034-10|CAI79119.2| 560|Caenorhabditis elegans Hypothetical
protein C18E9.3c protein.
Length = 560
Score = 28.3 bits (60), Expect = 5.9
Identities = 13/45 (28%), Positives = 22/45 (48%)
Frame = +3
Query: 78 GHIHQRANLQQRARVRAAYDARQQNGHEPQQQHKLGSDRTVQQEQ 212
G +H + N Q +++ QQ H+P QQH+ + V +Q
Sbjct: 330 GQLHHQMNAGQLHQIQQQQQQCQQIQHQPPQQHQQVINGQVMNQQ 374
>Z70034-3|CAA93860.2| 620|Caenorhabditis elegans Hypothetical
protein C18E9.3b protein.
Length = 620
Score = 28.3 bits (60), Expect = 5.9
Identities = 13/45 (28%), Positives = 22/45 (48%)
Frame = +3
Query: 78 GHIHQRANLQQRARVRAAYDARQQNGHEPQQQHKLGSDRTVQQEQ 212
G +H + N Q +++ QQ H+P QQH+ + V +Q
Sbjct: 390 GQLHHQMNAGQLHQIQQQQQQCQQIQHQPPQQHQQVINGQVMNQQ 434
>Z70034-2|CAA93854.3| 623|Caenorhabditis elegans Hypothetical
protein C18E9.3a protein.
Length = 623
Score = 28.3 bits (60), Expect = 5.9
Identities = 13/45 (28%), Positives = 22/45 (48%)
Frame = +3
Query: 78 GHIHQRANLQQRARVRAAYDARQQNGHEPQQQHKLGSDRTVQQEQ 212
G +H + N Q +++ QQ H+P QQH+ + V +Q
Sbjct: 393 GQLHHQMNAGQLHQIQQQQQQCQQIQHQPPQQHQQVINGQVMNQQ 437
>U56860-5|AAP40524.1| 685|Caenorhabditis elegans Intermediate
filament, c protein2, isoform c protein.
Length = 685
Score = 28.3 bits (60), Expect = 5.9
Identities = 11/31 (35%), Positives = 21/31 (67%)
Frame = +3
Query: 141 RQQNGHEPQQQHKLGSDRTVQQEQRTDARRR 233
RQ+ G++ QQQH+ +T +QE++ + +R
Sbjct: 290 RQEQGYQQQQQHRSREYKTHRQEKQENYNQR 320
>U56860-4|AAM69100.1| 1128|Caenorhabditis elegans Intermediate
filament, c protein2, isoform a protein.
Length = 1128
Score = 28.3 bits (60), Expect = 5.9
Identities = 11/31 (35%), Positives = 21/31 (67%)
Frame = +3
Query: 141 RQQNGHEPQQQHKLGSDRTVQQEQRTDARRR 233
RQ+ G++ QQQH+ +T +QE++ + +R
Sbjct: 290 RQEQGYQQQQQHRSREYKTHRQEKQENYNQR 320
>U56860-3|AAM69101.1| 1248|Caenorhabditis elegans Intermediate
filament, c protein2, isoform b protein.
Length = 1248
Score = 28.3 bits (60), Expect = 5.9
Identities = 11/31 (35%), Positives = 21/31 (67%)
Frame = +3
Query: 141 RQQNGHEPQQQHKLGSDRTVQQEQRTDARRR 233
RQ+ G++ QQQH+ +T +QE++ + +R
Sbjct: 290 RQEQGYQQQQQHRSREYKTHRQEKQENYNQR 320
>U15406-1|AAA50456.1| 2272|Caenorhabditis elegans gag, pol and env
protein precursor protein.
Length = 2272
Score = 28.3 bits (60), Expect = 5.9
Identities = 16/44 (36%), Positives = 22/44 (50%)
Frame = +1
Query: 85 FTNAQTYNNAPGYVPPTTRDNKMDTSRSNSTNSVAIAPYNKSKE 216
F N T NN + P DN ++ +NS N+ A A N S+E
Sbjct: 570 FVNQNTQNNFKPFSPNKAADNSRNSWNNNSQNNSA-ASQNISRE 612
>L23646-13|AAA28035.2| 2175|Caenorhabditis elegans C. elegans RETR-1
protein, isoforma protein.
Length = 2175
Score = 28.3 bits (60), Expect = 5.9
Identities = 16/44 (36%), Positives = 22/44 (50%)
Frame = +1
Query: 85 FTNAQTYNNAPGYVPPTTRDNKMDTSRSNSTNSVAIAPYNKSKE 216
F N T NN + P DN ++ +NS N+ A A N S+E
Sbjct: 473 FVNQNTQNNFKPFSPNKAADNSRNSWNNNSQNNSA-ASQNISRE 515
>L23646-12|AAL02516.1| 2186|Caenorhabditis elegans C. elegans RETR-1
protein, isoformb protein.
Length = 2186
Score = 28.3 bits (60), Expect = 5.9
Identities = 16/44 (36%), Positives = 22/44 (50%)
Frame = +1
Query: 85 FTNAQTYNNAPGYVPPTTRDNKMDTSRSNSTNSVAIAPYNKSKE 216
F N T NN + P DN ++ +NS N+ A A N S+E
Sbjct: 484 FVNQNTQNNFKPFSPNKAADNSRNSWNNNSQNNSA-ASQNISRE 526
>AF067617-5|AAC17559.1| 2957|Caenorhabditis elegans Temporarily
assigned gene nameprotein 192 protein.
Length = 2957
Score = 28.3 bits (60), Expect = 5.9
Identities = 22/95 (23%), Positives = 40/95 (42%), Gaps = 2/95 (2%)
Frame = -3
Query: 663 GMGMLHVTDSATMYWTAKLSCLPASAKASLPNISAPPL*NFCAYAGS--EFSTKMPEIYS 490
G+GM + TM A++ + + SLP PP+ + + S E+S +P +++
Sbjct: 2535 GVGMQELAKLNTMSKDARVPMIHKQTRESLPVSKRPPIRDLTVFVMSNPEWSIDIP-LFN 2593
Query: 489 NRSAGTRPRCLVPTLFATESGGVSWSPPIQTALPR 385
S P+ A S + P+ A P+
Sbjct: 2594 EMSGNGTGSGAAPSSKAASSRPTPAATPLAVATPK 2628
>Z81056-1|CAB02902.1| 319|Caenorhabditis elegans Hypothetical
protein F09F3.1 protein.
Length = 319
Score = 27.9 bits (59), Expect = 7.8
Identities = 11/39 (28%), Positives = 18/39 (46%)
Frame = +3
Query: 255 CVDFVQKIIRYYRCNDMSELSPLMIHFINTIRDMCIDTN 371
C + YY M +SPL + +NT+ +C+ N
Sbjct: 80 CATLTFSQVNYYLNRTMGMVSPLWSYILNTLIPICLSCN 118
>U80448-6|AAO12417.1| 687|Caenorhabditis elegans Hypothetical
protein F59A3.2b protein.
Length = 687
Score = 27.9 bits (59), Expect = 7.8
Identities = 21/67 (31%), Positives = 29/67 (43%), Gaps = 4/67 (5%)
Frame = +1
Query: 43 PPPLRYPSNPATAIFTNAQTYNNAPGYVPPTTRDNK--MDTSRSNSTNSVAIAPYNKS-- 210
PPP Y S+P A+F Y P +P T N+ D S + S ++K+
Sbjct: 555 PPPQIY-SSPGQALFNPTNLYPTPPSSLPNTYVPNQESFDESVNRDKKSFIFNNHSKANF 613
Query: 211 KEPTLDA 231
PTL A
Sbjct: 614 SNPTLTA 620
>U80448-5|AAB37819.1| 975|Caenorhabditis elegans Hypothetical
protein F59A3.2a protein.
Length = 975
Score = 27.9 bits (59), Expect = 7.8
Identities = 21/67 (31%), Positives = 29/67 (43%), Gaps = 4/67 (5%)
Frame = +1
Query: 43 PPPLRYPSNPATAIFTNAQTYNNAPGYVPPTTRDNK--MDTSRSNSTNSVAIAPYNKS-- 210
PPP Y S+P A+F Y P +P T N+ D S + S ++K+
Sbjct: 555 PPPQIY-SSPGQALFNPTNLYPTPPSSLPNTYVPNQESFDESVNRDKKSFIFNNHSKANF 613
Query: 211 KEPTLDA 231
PTL A
Sbjct: 614 SNPTLTA 620
>AC024824-3|AAK85501.1| 543|Caenorhabditis elegans Hypothetical
protein Y55B1BR.1 protein.
Length = 543
Score = 27.9 bits (59), Expect = 7.8
Identities = 12/38 (31%), Positives = 22/38 (57%)
Frame = +1
Query: 58 YPSNPATAIFTNAQTYNNAPGYVPPTTRDNKMDTSRSN 171
+PS +T ++ ++ Y+PP TRD ++ SR+N
Sbjct: 466 FPSLVSTG--NTVESSEDSDTYIPPPTRDQNIERSRNN 501
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,754,920
Number of Sequences: 27780
Number of extensions: 376027
Number of successful extensions: 1645
Number of sequences better than 10.0: 28
Number of HSP's better than 10.0 without gapping: 1412
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1636
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1714401074
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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