Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV120012.Seq
(701 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U41272-4|AAA82448.2| 349|Caenorhabditis elegans Hypothetical pr... 30 1.4
U80023-2|AAG24035.1| 204|Caenorhabditis elegans Hypothetical pr... 30 1.8
U97592-4|AAB52872.1| 450|Caenorhabditis elegans Hypothetical pr... 29 2.4
EF584656-1|ABQ57414.1| 500|Caenorhabditis elegans LAD-2 short i... 29 2.4
EF584655-1|ABQ57413.1| 1187|Caenorhabditis elegans LAD-2 long is... 29 2.4
AF456361-1|AAL60232.1| 1187|Caenorhabditis elegans immunoglobuli... 29 2.4
AC024817-51|AAP68914.1| 496|Caenorhabditis elegans L1 cam adhes... 29 2.4
AC024817-49|AAF59572.3| 1187|Caenorhabditis elegans L1 cam adhes... 29 2.4
Z81116-13|CAB03300.1| 245|Caenorhabditis elegans Hypothetical p... 29 4.3
Z22179-17|CAA80171.2| 691|Caenorhabditis elegans Hypothetical p... 29 4.3
Z22173-3|CAA80127.2| 691|Caenorhabditis elegans Hypothetical pr... 29 4.3
U41532-4|AAK68320.1| 767|Caenorhabditis elegans Hypothetical pr... 29 4.3
U41532-3|AAK68319.1| 797|Caenorhabditis elegans Hypothetical pr... 29 4.3
U64861-2|AAB04994.1| 117|Caenorhabditis elegans Hypothetical pr... 28 5.6
Z81533-4|CAB04338.1| 280|Caenorhabditis elegans Hypothetical pr... 27 9.8
Z81051-12|CAB02861.2| 228|Caenorhabditis elegans Hypothetical p... 27 9.8
>U41272-4|AAA82448.2| 349|Caenorhabditis elegans Hypothetical
protein T03G11.3 protein.
Length = 349
Score = 30.3 bits (65), Expect = 1.4
Identities = 20/48 (41%), Positives = 28/48 (58%), Gaps = 1/48 (2%)
Frame = +3
Query: 162 KYGNCKDAVSRHVDKKYKYTYSESGARLPPSLQTAWQSKAIRC-ICSR 302
++GN DAVS K+ Y ++GA LPP +TA S ++C CSR
Sbjct: 94 RHGNFIDAVSS--SKRVDYAL-KTGAPLPPPPKTAVPSDYVQCEYCSR 138
>U80023-2|AAG24035.1| 204|Caenorhabditis elegans Hypothetical
protein F07C4.6 protein.
Length = 204
Score = 29.9 bits (64), Expect = 1.8
Identities = 14/32 (43%), Positives = 19/32 (59%), Gaps = 1/32 (3%)
Frame = -2
Query: 127 TCGFPC-SSTYLSVNVSWPNLNCPILT*AILI 35
TCG C +STY N +P LNC +T A+ +
Sbjct: 104 TCGLCCQTSTYSCQNAPFPRLNCASVTKAMCL 135
>U97592-4|AAB52872.1| 450|Caenorhabditis elegans Hypothetical
protein C14A11.5 protein.
Length = 450
Score = 29.5 bits (63), Expect = 2.4
Identities = 12/39 (30%), Positives = 22/39 (56%)
Frame = +3
Query: 165 YGNCKDAVSRHVDKKYKYTYSESGARLPPSLQTAWQSKA 281
YGNCK+++ V++KY + + L L+ W S++
Sbjct: 322 YGNCKESIRSRVEEKYNQLFIDRIRELTEKLE--WSSES 358
>EF584656-1|ABQ57414.1| 500|Caenorhabditis elegans LAD-2 short
isoform protein.
Length = 500
Score = 29.5 bits (63), Expect = 2.4
Identities = 16/37 (43%), Positives = 21/37 (56%)
Frame = -1
Query: 200 HVSAYSVFTISIF*TAGDVLGHKLDLRVSLLEHVPQR 90
H Y F +IF TA L +K+ LR+ LEH P+R
Sbjct: 98 HQGYYQCFASNIFGTA---LSNKMHLRLGSLEHFPKR 131
>EF584655-1|ABQ57413.1| 1187|Caenorhabditis elegans LAD-2 long
isoform protein.
Length = 1187
Score = 29.5 bits (63), Expect = 2.4
Identities = 16/37 (43%), Positives = 21/37 (56%)
Frame = -1
Query: 200 HVSAYSVFTISIF*TAGDVLGHKLDLRVSLLEHVPQR 90
H Y F +IF TA L +K+ LR+ LEH P+R
Sbjct: 98 HQGYYQCFASNIFGTA---LSNKMHLRLGSLEHFPKR 131
>AF456361-1|AAL60232.1| 1187|Caenorhabditis elegans immunoglobulin
domain-containingprotein Y54G2A.25 protein.
Length = 1187
Score = 29.5 bits (63), Expect = 2.4
Identities = 16/37 (43%), Positives = 21/37 (56%)
Frame = -1
Query: 200 HVSAYSVFTISIF*TAGDVLGHKLDLRVSLLEHVPQR 90
H Y F +IF TA L +K+ LR+ LEH P+R
Sbjct: 98 HQGYYQCFASNIFGTA---LSNKMHLRLGSLEHFPKR 131
>AC024817-51|AAP68914.1| 496|Caenorhabditis elegans L1 cam adhesion
molecule homologprotein 2, isoform b protein.
Length = 496
Score = 29.5 bits (63), Expect = 2.4
Identities = 16/37 (43%), Positives = 21/37 (56%)
Frame = -1
Query: 200 HVSAYSVFTISIF*TAGDVLGHKLDLRVSLLEHVPQR 90
H Y F +IF TA L +K+ LR+ LEH P+R
Sbjct: 98 HQGYYQCFASNIFGTA---LSNKMHLRLGSLEHFPKR 131
>AC024817-49|AAF59572.3| 1187|Caenorhabditis elegans L1 cam adhesion
molecule homologprotein 2, isoform a protein.
Length = 1187
Score = 29.5 bits (63), Expect = 2.4
Identities = 16/37 (43%), Positives = 21/37 (56%)
Frame = -1
Query: 200 HVSAYSVFTISIF*TAGDVLGHKLDLRVSLLEHVPQR 90
H Y F +IF TA L +K+ LR+ LEH P+R
Sbjct: 98 HQGYYQCFASNIFGTA---LSNKMHLRLGSLEHFPKR 131
>Z81116-13|CAB03300.1| 245|Caenorhabditis elegans Hypothetical
protein T06C12.14 protein.
Length = 245
Score = 28.7 bits (61), Expect = 4.3
Identities = 12/26 (46%), Positives = 17/26 (65%), Gaps = 1/26 (3%)
Frame = -2
Query: 124 CGFPC-SSTYLSVNVSWPNLNCPILT 50
CG C +S+Y NV++P LNC +T
Sbjct: 105 CGLCCQTSSYSCPNVAFPRLNCATIT 130
>Z22179-17|CAA80171.2| 691|Caenorhabditis elegans Hypothetical
protein F58A4.11 protein.
Length = 691
Score = 28.7 bits (61), Expect = 4.3
Identities = 17/54 (31%), Positives = 25/54 (46%)
Frame = -3
Query: 387 SHSCNSMAYGSLLFIIN*ITPDLVISTVCGCKYSGSPCFATLFGARAVVSPPTR 226
S + N + L +N +TP L ++ G SPC T A +V S PT+
Sbjct: 138 SAAFNQQLFKQTLANLNTVTPQLPVNIPTGLPMPASPC-TTAASAPSVESTPTK 190
>Z22173-3|CAA80127.2| 691|Caenorhabditis elegans Hypothetical
protein F58A4.11 protein.
Length = 691
Score = 28.7 bits (61), Expect = 4.3
Identities = 17/54 (31%), Positives = 25/54 (46%)
Frame = -3
Query: 387 SHSCNSMAYGSLLFIIN*ITPDLVISTVCGCKYSGSPCFATLFGARAVVSPPTR 226
S + N + L +N +TP L ++ G SPC T A +V S PT+
Sbjct: 138 SAAFNQQLFKQTLANLNTVTPQLPVNIPTGLPMPASPC-TTAASAPSVESTPTK 190
>U41532-4|AAK68320.1| 767|Caenorhabditis elegans Hypothetical
protein F11D5.3b protein.
Length = 767
Score = 28.7 bits (61), Expect = 4.3
Identities = 10/17 (58%), Positives = 12/17 (70%)
Frame = -3
Query: 201 PRVCLQRLYNFHILNCW 151
PR+C +LYN IL CW
Sbjct: 722 PRMCPSKLYNEQILPCW 738
>U41532-3|AAK68319.1| 797|Caenorhabditis elegans Hypothetical
protein F11D5.3a protein.
Length = 797
Score = 28.7 bits (61), Expect = 4.3
Identities = 10/17 (58%), Positives = 12/17 (70%)
Frame = -3
Query: 201 PRVCLQRLYNFHILNCW 151
PR+C +LYN IL CW
Sbjct: 752 PRMCPSKLYNEQILPCW 768
>U64861-2|AAB04994.1| 117|Caenorhabditis elegans Hypothetical
protein C47D2.1 protein.
Length = 117
Score = 28.3 bits (60), Expect = 5.6
Identities = 13/35 (37%), Positives = 17/35 (48%)
Frame = +3
Query: 213 KYTYSESGARLPPSLQTAWQSKAIRCICSRIQCLL 317
K+ Y+ L Q+ WQS C S +QCLL
Sbjct: 67 KFQYTGRNQILEKRPQSPWQSPLRNCYLSPVQCLL 101
>Z81533-4|CAB04338.1| 280|Caenorhabditis elegans Hypothetical
protein F36G9.7 protein.
Length = 280
Score = 27.5 bits (58), Expect = 9.8
Identities = 14/32 (43%), Positives = 20/32 (62%)
Frame = -2
Query: 172 FPYFKLLAMSLATNLTCGFPCSSTYLSVNVSW 77
FPY++ L TNLTC +S ++ VNVS+
Sbjct: 241 FPYYEYLCTHYWTNLTC---YTSIFVFVNVSF 269
>Z81051-12|CAB02861.2| 228|Caenorhabditis elegans Hypothetical
protein C55A6.1 protein.
Length = 228
Score = 27.5 bits (58), Expect = 9.8
Identities = 13/28 (46%), Positives = 16/28 (57%)
Frame = +1
Query: 493 IYRAHNALQGWWRKKPRNFLKSKSLSNA 576
IY N QGWWR +PRN + + NA
Sbjct: 114 IYSGKN--QGWWRFEPRNEREIEEAYNA 139
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,545,291
Number of Sequences: 27780
Number of extensions: 317974
Number of successful extensions: 820
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 779
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 815
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1624019012
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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