Silkworm BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060084.seq
         (493 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z48334-1|CAA88308.1|  214|Caenorhabditis elegans Hypothetical pr...   140   5e-34
AF016450-13|AAB65988.2|  472|Caenorhabditis elegans Hypothetical...    29   1.4  
Z46791-1|CAA86761.1|  476|Caenorhabditis elegans Hypothetical pr...    28   3.2  
AF099919-10|AAC68792.1|  205|Caenorhabditis elegans Max-like pro...    28   3.2  
AF003151-1|AAK18921.2| 1184|Caenorhabditis elegans Hypothetical ...    28   3.2  
U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis def...    27   5.6  
U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis def...    27   5.6  
AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein.    27   5.6  
Z68760-10|CAL49442.1| 1427|Caenorhabditis elegans Hypothetical p...    27   9.8  
Z68760-9|CAJ80808.1| 1379|Caenorhabditis elegans Hypothetical pr...    27   9.8  
Z68760-8|CAA92996.1| 1398|Caenorhabditis elegans Hypothetical pr...    27   9.8  
AL021497-19|CAA16406.2|  989|Caenorhabditis elegans Hypothetical...    27   9.8  

>Z48334-1|CAA88308.1|  214|Caenorhabditis elegans Hypothetical
           protein F10B5.1 protein.
          Length = 214

 Score =  140 bits (339), Expect = 5e-34
 Identities = 62/75 (82%), Positives = 65/75 (86%)
 Frame = +2

Query: 29  MGRRPARCYRYCKNKPYPKSRFCRGVPDPKIRIFDLGKKRATVDDFPLCVHLVSDEYEQL 208
           MGRRPARCYRY KNKPYPKSRFCRGVPD KIRIFDLG KRA VD FP CVH++S+E E L
Sbjct: 1   MGRRPARCYRYIKNKPYPKSRFCRGVPDAKIRIFDLGNKRANVDTFPACVHMMSNEREHL 60

Query: 209 SSEALEAGRICCNKY 253
           SSEALEA RIC NKY
Sbjct: 61  SSEALEAARICANKY 75



 Score =  102 bits (245), Expect = 1e-22
 Identities = 45/53 (84%), Positives = 48/53 (90%)
 Frame = +1

Query: 256 VKNCGKDQFHIRMRLHPFHVIRINKMLSCAGADRLQTGMRGAFGKPXGTVARV 414
           VKNCGKD FH+R+R HPFHV RINKMLSCAGADRLQTGMRGA+GKP G VARV
Sbjct: 77  VKNCGKDGFHLRVRKHPFHVTRINKMLSCAGADRLQTGMRGAYGKPQGLVARV 129


>AF016450-13|AAB65988.2|  472|Caenorhabditis elegans Hypothetical
           protein B0238.9 protein.
          Length = 472

 Score = 29.5 bits (63), Expect = 1.4
 Identities = 14/68 (20%), Positives = 32/68 (47%)
 Frame = +3

Query: 69  INRIRNRGSVGVYLIPRSVSSIWVRRERPLTTFHCACTWCPTNMNS*AQRLWRQDVSAAI 248
           + R+ + GS   + +P+  +++W R+ + L    C C      M    Q L+ ++ +   
Sbjct: 82  VKRLASLGSARGWTVPQRRNNLWERKGQSLIGKFCRCRCDRGQMTRDKQALYEKEKAVEK 141

Query: 249 STRKELRK 272
             +K+ +K
Sbjct: 142 EKKKKAKK 149


>Z46791-1|CAA86761.1|  476|Caenorhabditis elegans Hypothetical
           protein C09G5.2 protein.
          Length = 476

 Score = 28.3 bits (60), Expect = 3.2
 Identities = 9/17 (52%), Positives = 13/17 (76%)
 Frame = -3

Query: 392 GLPNAPRIPVWSLSAPA 342
           G PN+P +P+W LS P+
Sbjct: 232 GFPNSPLLPIWLLSYPS 248


>AF099919-10|AAC68792.1|  205|Caenorhabditis elegans Max-like
           protein 2 protein.
          Length = 205

 Score = 28.3 bits (60), Expect = 3.2
 Identities = 14/49 (28%), Positives = 26/49 (53%)
 Frame = +2

Query: 89  RFCRGVPDPKIRIFDLGKKRATVDDFPLCVHLVSDEYEQLSSEALEAGR 235
           R C  +   K  I D  K+ A ++     + +++ EYEQ++S   +AG+
Sbjct: 93  RACDFMSQLKTDISDADKQLAQLNAQAAALEMIASEYEQMASSVPDAGQ 141


>AF003151-1|AAK18921.2| 1184|Caenorhabditis elegans Hypothetical
           protein D1007.15 protein.
          Length = 1184

 Score = 28.3 bits (60), Expect = 3.2
 Identities = 24/73 (32%), Positives = 35/73 (47%)
 Frame = -1

Query: 274 PFRSSLRVLIAADTSCLQSL*AQLFIFVGHQVHAQWKVVNGRSLLTQIEDTDLGIRYTPT 95
           P ++ L   ++AD S LQ    QL   + H V   + +    +LL  I  T +   Y+  
Sbjct: 226 PIKNHLETALSADDSPLQ-FDYQLQYMI-HNVFEHYVIPV--ALLCSILGTIVRFCYSDD 281

Query: 94  EPRFRIRFIFAVP 56
           E  F  RF+FAVP
Sbjct: 282 ENLFGTRFVFAVP 294


>U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis defect
           protein 1, isoformb protein.
          Length = 1437

 Score = 27.5 bits (58), Expect = 5.6
 Identities = 14/36 (38%), Positives = 22/36 (61%), Gaps = 2/36 (5%)
 Frame = -1

Query: 151 RSLLTQIED--TDLGIRYTPTEPRFRIRFIFAVPVA 50
           RS +  IE   +D+ +  TP +P+   +F+F VPVA
Sbjct: 593 RSYMKLIETAISDILLHRTPIDPQADYKFVFEVPVA 628


>U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis defect
           protein 1, isoforma protein.
          Length = 1435

 Score = 27.5 bits (58), Expect = 5.6
 Identities = 14/36 (38%), Positives = 22/36 (61%), Gaps = 2/36 (5%)
 Frame = -1

Query: 151 RSLLTQIED--TDLGIRYTPTEPRFRIRFIFAVPVA 50
           RS +  IE   +D+ +  TP +P+   +F+F VPVA
Sbjct: 593 RSYMKLIETAISDILLHRTPIDPQADYKFVFEVPVA 628


>AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein.
          Length = 1018

 Score = 27.5 bits (58), Expect = 5.6
 Identities = 14/36 (38%), Positives = 22/36 (61%), Gaps = 2/36 (5%)
 Frame = -1

Query: 151 RSLLTQIED--TDLGIRYTPTEPRFRIRFIFAVPVA 50
           RS +  IE   +D+ +  TP +P+   +F+F VPVA
Sbjct: 176 RSYMKLIETAISDILLHRTPIDPQADYKFVFEVPVA 211


>Z68760-10|CAL49442.1| 1427|Caenorhabditis elegans Hypothetical
            protein F36H1.2c protein.
          Length = 1427

 Score = 26.6 bits (56), Expect = 9.8
 Identities = 12/30 (40%), Positives = 18/30 (60%)
 Frame = +1

Query: 43   SEMLPVLQK*TVSEIEVLSGCT*SQDPYLR 132
            S+ +P  ++ TV  ++    CT S DPYLR
Sbjct: 1042 SKGIPSAERLTVGHVKKFVPCTSSLDPYLR 1071


>Z68760-9|CAJ80808.1| 1379|Caenorhabditis elegans Hypothetical protein
            F36H1.2b protein.
          Length = 1379

 Score = 26.6 bits (56), Expect = 9.8
 Identities = 12/30 (40%), Positives = 18/30 (60%)
 Frame = +1

Query: 43   SEMLPVLQK*TVSEIEVLSGCT*SQDPYLR 132
            S+ +P  ++ TV  ++    CT S DPYLR
Sbjct: 1013 SKGIPSAERLTVGHVKKFVPCTSSLDPYLR 1042


>Z68760-8|CAA92996.1| 1398|Caenorhabditis elegans Hypothetical protein
            F36H1.2a protein.
          Length = 1398

 Score = 26.6 bits (56), Expect = 9.8
 Identities = 12/30 (40%), Positives = 18/30 (60%)
 Frame = +1

Query: 43   SEMLPVLQK*TVSEIEVLSGCT*SQDPYLR 132
            S+ +P  ++ TV  ++    CT S DPYLR
Sbjct: 1013 SKGIPSAERLTVGHVKKFVPCTSSLDPYLR 1042


>AL021497-19|CAA16406.2|  989|Caenorhabditis elegans Hypothetical
           protein Y51A2D.7a protein.
          Length = 989

 Score = 26.6 bits (56), Expect = 9.8
 Identities = 12/48 (25%), Positives = 22/48 (45%)
 Frame = +3

Query: 180 TWCPTNMNS*AQRLWRQDVSAAISTRKELRKGSVPYPHETSPFPRYPH 323
           T  PTN +    R+WR   +  +  R  +   +  +P    PF ++P+
Sbjct: 530 TLLPTNASQDVGRVWRAPRAHRLLVRPGIPAETRQHPRSHEPFAQFPN 577


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,822,898
Number of Sequences: 27780
Number of extensions: 253515
Number of successful extensions: 741
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 719
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 741
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 924715866
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)