Silkworm BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060082.seq
         (675 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF099002-2|AAC68740.2|  556|Caenorhabditis elegans Hypothetical ...   124   4e-29
AF099002-1|AAK68587.1|  559|Caenorhabditis elegans Hypothetical ...   124   4e-29
AF099002-3|AAO91691.1|  570|Caenorhabditis elegans Hypothetical ...    72   4e-20
AC006605-2|AAL00853.1|  139|Caenorhabditis elegans Hypothetical ...    32   0.43 
Z93372-3|CAB07545.1|  601|Caenorhabditis elegans Hypothetical pr...    31   0.99 
AF003132-1|AAB54133.3|  798|Caenorhabditis elegans Hypothetical ...    31   0.99 
AF025471-5|AAB71064.2|  334|Caenorhabditis elegans Serpentine re...    29   3.0  
AC006644-6|AAZ91358.1|  958|Caenorhabditis elegans Hypothetical ...    29   3.0  
Z78414-3|CAD60425.1|  309|Caenorhabditis elegans Hypothetical pr...    28   5.3  
Z82059-2|CAB04876.3|  557|Caenorhabditis elegans Hypothetical pr...    27   9.2  
Z47073-2|CAA87373.1|  507|Caenorhabditis elegans Hypothetical pr...    27   9.2  
AF390558-1|AAK72007.1|  308|Caenorhabditis elegans ced-3 proteas...    27   9.2  
AF003740-4|AAL08030.1|  308|Caenorhabditis elegans Ced-3 proteas...    27   9.2  
AC025726-3|AAK73917.2|  337|Caenorhabditis elegans Hypothetical ...    27   9.2  

>AF099002-2|AAC68740.2|  556|Caenorhabditis elegans Hypothetical
           protein Y71H10B.1a protein.
          Length = 556

 Score =  124 bits (300), Expect = 4e-29
 Identities = 55/93 (59%), Positives = 67/93 (72%)
 Frame = +3

Query: 252 QSLHLENVKFYGFDMDYTLAEYKSPQYETLGFNLTKERLVVKGYPREILEFEYDPSFPVR 431
           +SL LE +  +GFDMDYTL +YK+P  E L FN+  +RLV  GYP EI  F+YDP FPVR
Sbjct: 17  RSLRLEKITHFGFDMDYTLVQYKAPDMEYLAFNMAVQRLVDTGYPEEIKSFKYDPIFPVR 76

Query: 432 GLWFDTLYGNLLKVDAYGNILVCVHGLNF*NIH 530
           GLWF+  +GNLLKVD +GNIL  +HGL F   H
Sbjct: 77  GLWFEFQFGNLLKVDGFGNILGGIHGLRFLKNH 109



 Score = 72.1 bits (169), Expect = 3e-13
 Identities = 31/45 (68%), Positives = 39/45 (86%)
 Frame = +2

Query: 515 FLKHSQVYELYPNKFLTLDESRVYVLNTLFNLPETYLIACLIDFF 649
           FLK+ ++ E+YPNK+L L +SRVYVLNTLFN+PET+LI  LIDFF
Sbjct: 105 FLKNHEIEEMYPNKYLPLSDSRVYVLNTLFNMPETHLICQLIDFF 149


>AF099002-1|AAK68587.1|  559|Caenorhabditis elegans Hypothetical
           protein Y71H10B.1b protein.
          Length = 559

 Score =  124 bits (300), Expect = 4e-29
 Identities = 55/93 (59%), Positives = 67/93 (72%)
 Frame = +3

Query: 252 QSLHLENVKFYGFDMDYTLAEYKSPQYETLGFNLTKERLVVKGYPREILEFEYDPSFPVR 431
           +SL LE +  +GFDMDYTL +YK+P  E L FN+  +RLV  GYP EI  F+YDP FPVR
Sbjct: 20  RSLRLEKITHFGFDMDYTLVQYKAPDMEYLAFNMAVQRLVDTGYPEEIKSFKYDPIFPVR 79

Query: 432 GLWFDTLYGNLLKVDAYGNILVCVHGLNF*NIH 530
           GLWF+  +GNLLKVD +GNIL  +HGL F   H
Sbjct: 80  GLWFEFQFGNLLKVDGFGNILGGIHGLRFLKNH 112



 Score = 72.1 bits (169), Expect = 3e-13
 Identities = 31/45 (68%), Positives = 39/45 (86%)
 Frame = +2

Query: 515 FLKHSQVYELYPNKFLTLDESRVYVLNTLFNLPETYLIACLIDFF 649
           FLK+ ++ E+YPNK+L L +SRVYVLNTLFN+PET+LI  LIDFF
Sbjct: 108 FLKNHEIEEMYPNKYLPLSDSRVYVLNTLFNMPETHLICQLIDFF 152


>AF099002-3|AAO91691.1|  570|Caenorhabditis elegans Hypothetical
           protein Y71H10B.1c protein.
          Length = 570

 Score = 72.1 bits (169), Expect = 3e-13
 Identities = 31/45 (68%), Positives = 39/45 (86%)
 Frame = +2

Query: 515 FLKHSQVYELYPNKFLTLDESRVYVLNTLFNLPETYLIACLIDFF 649
           FLK+ ++ E+YPNK+L L +SRVYVLNTLFN+PET+LI  LIDFF
Sbjct: 119 FLKNHEIEEMYPNKYLPLSDSRVYVLNTLFNMPETHLICQLIDFF 163



 Score = 67.7 bits (158), Expect(2) = 4e-20
 Identities = 29/47 (61%), Positives = 34/47 (72%)
 Frame = +3

Query: 294 MDYTLAEYKSPQYETLGFNLTKERLVVKGYPREILEFEYDPSFPVRG 434
           MDYTL +YK+P  E L FN+  +RLV  GYP EI  F+YDP FPVRG
Sbjct: 1   MDYTLVQYKAPDMEYLAFNMAVQRLVDTGYPEEIKSFKYDPIFPVRG 47



 Score = 48.0 bits (109), Expect(2) = 4e-20
 Identities = 21/38 (55%), Positives = 26/38 (68%)
 Frame = +3

Query: 417 SFPVRGLWFDTLYGNLLKVDAYGNILVCVHGLNF*NIH 530
           +F   GLWF+  +GNLLKVD +GNIL  +HGL F   H
Sbjct: 86  NFLYLGLWFEFQFGNLLKVDGFGNILGGIHGLRFLKNH 123


>AC006605-2|AAL00853.1|  139|Caenorhabditis elegans Hypothetical
           protein C07H6.9 protein.
          Length = 139

 Score = 31.9 bits (69), Expect = 0.43
 Identities = 12/39 (30%), Positives = 25/39 (64%)
 Frame = -1

Query: 219 VFLGHNIFILKSQALVFLTNIHFKFRIKNYVKSLIIVYF 103
           V+LG   F +K+++ V+L+ ++ +F +      LI++YF
Sbjct: 14  VYLGSAYFYMKTESFVYLSLVYIQFSLFFLTSILIVIYF 52


>Z93372-3|CAB07545.1|  601|Caenorhabditis elegans Hypothetical
           protein BE10.3 protein.
          Length = 601

 Score = 30.7 bits (66), Expect = 0.99
 Identities = 13/28 (46%), Positives = 19/28 (67%)
 Frame = +2

Query: 527 SQVYELYPNKFLTLDESRVYVLNTLFNL 610
           S V +++  KFLTL+  + Y+L T FNL
Sbjct: 354 SNVQKIFSTKFLTLELPKAYILMTPFNL 381


>AF003132-1|AAB54133.3|  798|Caenorhabditis elegans Hypothetical
           protein F37E3.1 protein.
          Length = 798

 Score = 30.7 bits (66), Expect = 0.99
 Identities = 15/42 (35%), Positives = 26/42 (61%), Gaps = 1/42 (2%)
 Frame = +3

Query: 351 LTKERLVVKGYPREILEF-EYDPSFPVRGLWFDTLYGNLLKV 473
           + K +   K   RE+L F E +PS P+  L F+T++G +L++
Sbjct: 325 IEKNQFNRKACARELLAFAEENPSVPIGFLIFETIFGQMLRL 366


>AF025471-5|AAB71064.2|  334|Caenorhabditis elegans Serpentine
           receptor, class h protein195 protein.
          Length = 334

 Score = 29.1 bits (62), Expect = 3.0
 Identities = 21/73 (28%), Positives = 36/73 (49%), Gaps = 4/73 (5%)
 Frame = +2

Query: 449 VIWKFA-QSRCLREY-FSVCTWFEFLKHSQVYELYPNKFLTLDESRVYVL--NTLFNLPE 616
           ++WK   Q + ++ Y F++ TW     +S    L    F+ ++E   Y L  +   N+PE
Sbjct: 38  ILWKTPEQMKSVKWYMFTLHTWILLFDYS--LSLLTAPFVLVNEGAGYPLGLSKYTNVPE 95

Query: 617 TYLIACLIDFFTN 655
            +    +IDF TN
Sbjct: 96  VFQFMIVIDFATN 108


>AC006644-6|AAZ91358.1|  958|Caenorhabditis elegans Hypothetical
           protein F55A3.1 protein.
          Length = 958

 Score = 29.1 bits (62), Expect = 3.0
 Identities = 16/54 (29%), Positives = 29/54 (53%)
 Frame = -1

Query: 225 TIVFLGHNIFILKSQALVFLTNIHFKFRIKNYVKSLIIVYFQKIYSTSEHALFL 64
           +++FL H  +++    L   T  +F FRI N+  S+I ++ +  Y  S  A+ L
Sbjct: 412 SLIFLEHVFWVISLNTLFTATFAYFPFRIGNWFLSVIGLHGKISYFPSIVAMLL 465


>Z78414-3|CAD60425.1|  309|Caenorhabditis elegans Hypothetical
           protein W09D12.3 protein.
          Length = 309

 Score = 28.3 bits (60), Expect = 5.3
 Identities = 12/28 (42%), Positives = 16/28 (57%)
 Frame = +1

Query: 178 CLTLQDKNIMSKKYYRRVEHRIFVNSRC 261
           CL   D+  +S  +YR V+  IFVN  C
Sbjct: 24  CLPFVDRKNLSNPFYRLVQIDIFVNITC 51


>Z82059-2|CAB04876.3|  557|Caenorhabditis elegans Hypothetical
           protein T27E9.5 protein.
          Length = 557

 Score = 27.5 bits (58), Expect = 9.2
 Identities = 11/32 (34%), Positives = 20/32 (62%)
 Frame = -2

Query: 332 VLWRFVFGQCIVHIKTVKFNIF*MQRLLTKIL 237
           +LWR +FG  ++++  ++F +F     L KIL
Sbjct: 201 ILWRVIFGLSVIYVIVLQFALFQSFDDLKKIL 232


>Z47073-2|CAA87373.1|  507|Caenorhabditis elegans Hypothetical
           protein ZC506.3 protein.
          Length = 507

 Score = 27.5 bits (58), Expect = 9.2
 Identities = 9/22 (40%), Positives = 15/22 (68%)
 Frame = -2

Query: 332 VLWRFVFGQCIVHIKTVKFNIF 267
           V WR VFG  +V++  ++F +F
Sbjct: 152 VFWRIVFGVSVVYLMLLQFTLF 173


>AF390558-1|AAK72007.1|  308|Caenorhabditis elegans ced-3 protease
           suppressor 6 protein.
          Length = 308

 Score = 27.5 bits (58), Expect = 9.2
 Identities = 19/55 (34%), Positives = 32/55 (58%), Gaps = 2/55 (3%)
 Frame = +3

Query: 297 DYTLA-EYKSPQYETLGFNLTKERLV-VKGYPREILEFEYDPSFPVRGLWFDTLY 455
           D+ L+ +YK+     +  +LT ERL   +G  R++ EF+ D +FP + L  +T Y
Sbjct: 85  DFVLSYDYKTRTAHWVCEHLTPERLKHAEGVDRKLCEFKPDITFPQKFLSQNTDY 139


>AF003740-4|AAL08030.1|  308|Caenorhabditis elegans Ced-3 protease
           suppressor protein 6 protein.
          Length = 308

 Score = 27.5 bits (58), Expect = 9.2
 Identities = 19/55 (34%), Positives = 32/55 (58%), Gaps = 2/55 (3%)
 Frame = +3

Query: 297 DYTLA-EYKSPQYETLGFNLTKERLV-VKGYPREILEFEYDPSFPVRGLWFDTLY 455
           D+ L+ +YK+     +  +LT ERL   +G  R++ EF+ D +FP + L  +T Y
Sbjct: 85  DFVLSYDYKTRTAHWVCEHLTPERLKHAEGVDRKLCEFKPDITFPQKFLSQNTDY 139


>AC025726-3|AAK73917.2|  337|Caenorhabditis elegans Hypothetical
           protein Y71G12B.18 protein.
          Length = 337

 Score = 27.5 bits (58), Expect = 9.2
 Identities = 12/34 (35%), Positives = 18/34 (52%)
 Frame = -1

Query: 120 LIIVYFQKIYSTSEHALFLLSTVPLANLWNKIFT 19
           ++++Y Q   + S+    L   VPL N WNK  T
Sbjct: 22  IVLLYGQTTSTDSDELTELRPNVPLFNSWNKCMT 55


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,346,509
Number of Sequences: 27780
Number of extensions: 328684
Number of successful extensions: 878
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 849
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 878
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1529108810
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)