Silkworm BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060079.seq
         (691 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U42436-10|AAF99899.1|  272|Caenorhabditis elegans Ribosomal prot...    36   0.027
U51998-6|ABS83845.1|  825|Caenorhabditis elegans Hypothetical pr...    30   1.8  
AF039711-8|ABS19466.1|  766|Caenorhabditis elegans Hypothetical ...    29   3.1  
U10402-8|AAA19070.2| 1024|Caenorhabditis elegans Hypothetical pr...    29   4.1  
AF100656-3|AAF99968.1|  265|Caenorhabditis elegans Hypothetical ...    29   4.1  
AC006761-2|AAF60547.1|  402|Caenorhabditis elegans Hypothetical ...    28   5.5  
Z68220-10|CAA92491.2| 1843|Caenorhabditis elegans Hypothetical p...    28   7.2  
U41032-4|AAO44918.2| 1130|Caenorhabditis elegans Protein kinase ...    27   9.6  
U41032-3|AAO44917.1| 1237|Caenorhabditis elegans Protein kinase ...    27   9.6  
U23178-5|AAN63417.1|  439|Caenorhabditis elegans Vh1 dual-specif...    27   9.6  
U23178-4|AAK68300.1|  606|Caenorhabditis elegans Vh1 dual-specif...    27   9.6  
U23178-3|AAK68299.1|  657|Caenorhabditis elegans Vh1 dual-specif...    27   9.6  
AY585194-1|AAS91377.1|  657|Caenorhabditis elegans VH1-like phos...    27   9.6  

>U42436-10|AAF99899.1|  272|Caenorhabditis elegans Ribosomal
           protein, small subunitprotein 2 protein.
          Length = 272

 Score = 35.9 bits (79), Expect = 0.027
 Identities = 16/27 (59%), Positives = 18/27 (66%)
 Frame = +2

Query: 137 EDQKXWVPVTKLGRLXREGKIDKLESI 217
           E +  W PVTKLGRL +E KI  LE I
Sbjct: 52  EKETEWTPVTKLGRLVKEKKITTLEEI 78


>U51998-6|ABS83845.1|  825|Caenorhabditis elegans Hypothetical
           protein C12D12.1c protein.
          Length = 825

 Score = 29.9 bits (64), Expect = 1.8
 Identities = 17/59 (28%), Positives = 27/59 (45%)
 Frame = +3

Query: 345 PSPAISATSTRSSNPRFHTPTTPDLTSISINPLTPY*KEFAPGLKPPLSSEAPSAISPP 521
           P+P  + T+T  +NP   TPTT   TS   N ++P+       +     + AP   + P
Sbjct: 490 PTPVPTTTNTPPANPTTATPTTVG-TSKQTNTISPHLSTITGSIVTSTPTMAPQTSASP 547


>AF039711-8|ABS19466.1|  766|Caenorhabditis elegans Hypothetical
           protein F49D11.10 protein.
          Length = 766

 Score = 29.1 bits (62), Expect = 3.1
 Identities = 17/38 (44%), Positives = 19/38 (50%), Gaps = 1/38 (2%)
 Frame = -2

Query: 363 PRSQGRVA*CIRARP-PIVMRADEGVASTLTPSTVTSE 253
           PRS   V  C R RP  IVM A  G      P T+T+E
Sbjct: 338 PRSLNTVFCCDRLRPRSIVMNAKPGTIQWFDPVTITTE 375


>U10402-8|AAA19070.2| 1024|Caenorhabditis elegans Hypothetical
           protein C34E10.8 protein.
          Length = 1024

 Score = 28.7 bits (61), Expect = 4.1
 Identities = 20/69 (28%), Positives = 26/69 (37%), Gaps = 7/69 (10%)
 Frame = +3

Query: 339 KLPSPAISATSTRSSNPRF----HTPTTPDLTSISINPLTPY*KEFA---PGLKPPLSSE 497
           K P P  S+ + RS   R     H      L    +     Y  + A   PG+ P     
Sbjct: 602 KSPQPGTSSQTFRSQASRLPIAPHRAIAAGLNPADVGTRPAYRSQMAGQRPGMTPSAQQG 661

Query: 498 APSAISPPR 524
           +P  ISPPR
Sbjct: 662 SPQLISPPR 670


>AF100656-3|AAF99968.1|  265|Caenorhabditis elegans Hypothetical
           protein F49F1.1 protein.
          Length = 265

 Score = 28.7 bits (61), Expect = 4.1
 Identities = 13/54 (24%), Positives = 28/54 (51%)
 Frame = +3

Query: 345 PSPAISATSTRSSNPRFHTPTTPDLTSISINPLTPY*KEFAPGLKPPLSSEAPS 506
           P+   S ++  +  P   T  TP+LT++++ P+T   K     + P  +++ P+
Sbjct: 160 PATCGSCSNGTTGVPLVLTTLTPELTTVTVEPITSTLKPTTTTITPTTTTKLPT 213


>AC006761-2|AAF60547.1|  402|Caenorhabditis elegans Hypothetical
           protein Y41G9A.5 protein.
          Length = 402

 Score = 28.3 bits (60), Expect = 5.5
 Identities = 12/35 (34%), Positives = 23/35 (65%), Gaps = 1/35 (2%)
 Frame = +3

Query: 348 SPAISATSTRSSNPRFHTPTTPD-LTSISINPLTP 449
           SPAI +T+T +++P+  T  TP+ +T++    + P
Sbjct: 270 SPAIESTTTTTASPKTSTTLTPEPITTVPAKDVKP 304


>Z68220-10|CAA92491.2| 1843|Caenorhabditis elegans Hypothetical
           protein T20D3.11 protein.
          Length = 1843

 Score = 27.9 bits (59), Expect = 7.2
 Identities = 10/23 (43%), Positives = 14/23 (60%)
 Frame = +1

Query: 328 PYASSYPPLRSRLHQPDHQIPDS 396
           P +S +PPL S  H  +H  PD+
Sbjct: 66  PTSSHHPPLNSSSHHSNHNYPDT 88


>U41032-4|AAO44918.2| 1130|Caenorhabditis elegans Protein kinase
           protein 25, isoformb protein.
          Length = 1130

 Score = 27.5 bits (58), Expect = 9.6
 Identities = 10/20 (50%), Positives = 15/20 (75%)
 Frame = -2

Query: 501 EPLMTTEALTPARTPSSTAS 442
           EP++++E L P R PS+T S
Sbjct: 877 EPILSSEVLQPTRLPSATTS 896


>U41032-3|AAO44917.1| 1237|Caenorhabditis elegans Protein kinase
            protein 25, isoforma protein.
          Length = 1237

 Score = 27.5 bits (58), Expect = 9.6
 Identities = 10/20 (50%), Positives = 15/20 (75%)
 Frame = -2

Query: 501  EPLMTTEALTPARTPSSTAS 442
            EP++++E L P R PS+T S
Sbjct: 984  EPILSSEVLQPTRLPSATTS 1003


>U23178-5|AAN63417.1|  439|Caenorhabditis elegans Vh1
           dual-specificity phosphatasefamily protein 1, isoform c
           protein.
          Length = 439

 Score = 27.5 bits (58), Expect = 9.6
 Identities = 14/39 (35%), Positives = 22/39 (56%)
 Frame = +3

Query: 336 IKLPSPAISATSTRSSNPRFHTPTTPDLTSISINPLTPY 452
           + LP+PA S++S+ SS P F   +    +S SI    P+
Sbjct: 340 LTLPTPAASSSSSTSSEPSFDFSSFESSSSSSIVVENPF 378


>U23178-4|AAK68300.1|  606|Caenorhabditis elegans Vh1
           dual-specificity phosphatasefamily protein 1, isoform b
           protein.
          Length = 606

 Score = 27.5 bits (58), Expect = 9.6
 Identities = 14/39 (35%), Positives = 22/39 (56%)
 Frame = +3

Query: 336 IKLPSPAISATSTRSSNPRFHTPTTPDLTSISINPLTPY 452
           + LP+PA S++S+ SS P F   +    +S SI    P+
Sbjct: 444 LTLPTPAASSSSSTSSEPSFDFSSFESSSSSSIVVENPF 482


>U23178-3|AAK68299.1|  657|Caenorhabditis elegans Vh1
           dual-specificity phosphatasefamily protein 1, isoform a
           protein.
          Length = 657

 Score = 27.5 bits (58), Expect = 9.6
 Identities = 14/39 (35%), Positives = 22/39 (56%)
 Frame = +3

Query: 336 IKLPSPAISATSTRSSNPRFHTPTTPDLTSISINPLTPY 452
           + LP+PA S++S+ SS P F   +    +S SI    P+
Sbjct: 495 LTLPTPAASSSSSTSSEPSFDFSSFESSSSSSIVVENPF 533


>AY585194-1|AAS91377.1|  657|Caenorhabditis elegans VH1-like
           phosphatase 1 protein.
          Length = 657

 Score = 27.5 bits (58), Expect = 9.6
 Identities = 14/39 (35%), Positives = 22/39 (56%)
 Frame = +3

Query: 336 IKLPSPAISATSTRSSNPRFHTPTTPDLTSISINPLTPY 452
           + LP+PA S++S+ SS P F   +    +S SI    P+
Sbjct: 495 LTLPTPAASSSSSTSSEPSFDFSSFESSSSSSIVVENPF 533


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,934,046
Number of Sequences: 27780
Number of extensions: 262320
Number of successful extensions: 915
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 833
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 915
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1581836700
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)